Ectopseudomonas mendocina ymp: Pmen_3538
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Entry
Pmen_3538 CDS
T00510
Name
(GenBank) SMC domain protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pmy
Ectopseudomonas mendocina ymp
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmy03400
]
Pmen_3538
DNA repair and recombination proteins [BR:
pmy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pmen_3538
Archaeal homologous recombinant proteins
Pmen_3538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
cobW
AAA_15
nSTAND3
AAA_21
AAA
RsgA_GTPase
AAA_22
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ABP86286
UniProt:
A4XY70
LinkDB
All DBs
Position
complement(3900155..3903589)
Genome browser
AA seq
1144 aa
AA seq
DB search
MKILSLRLKNLNSLKGEWKIDFAAEPFAGSGLFAITGPTGAGKTTLLDAICLALYHRTPR
MSTLSASGNELMTRHTADCLAEVEFEVKGQGYRAFWSQRRARDKVEGALQAPKVELARIA
DGEILTDKIREKEHLTAELTGLDFERFTKSMLLAQGGFAAFLEANANQRAELLEELTGTE
VYGLISQQVYERTKASEQALNLLKSRAQGMELLDEAQRAELQAEHQRLNQEEASLLARQQ
ALQGQRRWCEALQQAEQQCERARLGLEQAQQAHNEAAGELQRLAASEPAARLQPLYQSWQ
QLQQDRQQAQQELDDMQAQQRHSSEREHQQLWLASRYARQCLSLHQSEERSLAEQRDALQ
ARLRATPQRARLGELLGGWRAQFDQRGQLLMRQQTLRAGMAQEREQLATLQRQRDQLAAQ
QTDAATRLEQAQAREAGQHSELQALLGADDEAGLRQRWQQLQVQGRALDRLEQLAQSREQ
MAEQIAELTPRLAQLHTQHAAKNDEIIGLRERYKVLKQQVADKEKLLEQEQRIQDLEAYR
AHLQPGEACPLCGSHEHPAVSQYQALDVSATRQALEQCRSDLARLESQGGTLRDELTRLA
TQIAQLQQQLEQAQQRVAQQDAQWQQQLAEQALQIADGAALRQLQREHEQHLGQLQQRLA
QVETRQAELTQARSAREIAERALADMQQRLALLARDEENLQARQREQNERLQGLEQELRH
HDQALLASLDGFASELPADADTWLAEQASAWRDWQQAQAQHQQVQEQLRETQRLLAEAEA
RAEQWQQRWQTEQAQALIEPEPVAQPEQALQGAIDSLASAQRESDALRGRQQSQQSLLQQ
LQQRLSEAEQRWQQALAASPFTDLQAFLDALLDDEERERLTSLQARLQQALTEATTLLAA
ADAQWQQLSTTPQTELTLAELDEQLQALQLTLRELSQRQGELRAQLQADDARRSSQQALF
AEIAAQESEHALWQQLNGLIGSADGAKFRKFAQGLTLDHLIHLANRQLTRLHGRYQLARK
SSGELELEVCDTWQADVARDCRTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEGFG
TLDGETLEVALDALDNLNASGKTIGVISHVEAMKERIPVQLRVHKGVGLGYSRLDARFAV
KEGA
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctcagcctgcgcctcaagaacctcaactcgctcaagggcgaatggaagatc
gattttgctgccgagcccttcgccggcagcggcctgttcgccatcaccgggccgaccggc
gcgggcaagaccaccttgctcgatgccatctgcctggccctgtaccaccgcacaccgcga
atgagcacgctgtcggccagcggcaacgagctgatgacccggcacaccgccgactgcctg
gccgaggtggaattcgaggtgaaagggcagggctatcgcgccttctggagccagcgccgc
gcgcgggataaggtcgaaggcgcgctgcaggcgcccaaggtggagctggcgcgcattgcc
gacggtgaaatcctcaccgacaagattcgcgagaaggaacatctcaccgccgaactgacc
ggactggacttcgagcgtttcaccaaatccatgctgctggcccagggcggtttcgcggcc
ttcctcgaggccaacgccaaccagcgtgccgagctgctggaggaactgaccggcaccgag
gtgtacggactgatctcgcagcaggtctacgagcgcaccaaggcgtcggagcaggcgctg
aatctgctgaaaagccgcgctcagggcatggagctgctggacgaggcgcagcgcgccgaa
ttgcaggccgagcatcagcgcctgaatcaggaggaggcgtcgctgctggctcggcaacag
gccctgcaaggccagcgccgctggtgcgaagccctgcaacaggccgagcagcaatgcgag
cgggcgcgactgggactggagcaggcgcagcaggcgcacaacgaggcggccggcgagctg
cagcgtcttgccgccagtgaaccggccgcgcgcctgcagccgctgtatcagagctggcag
cagctgcagcaagaccgacagcaggcgcagcaggagctggacgatatgcaggcgcagcag
cgccacagcagcgagcgcgaacaccagcaactctggctggccagccgctacgcccggcaa
tgcctgagcctgcaccagagcgaagagcggagcctggccgagcagcgtgacgcgctgcaa
gcgcgtttgagggctaccccgcaacgtgcccgcctgggtgagttgcttggcggctggcgc
gcgcagttcgatcagcgcgggcaactgctcatgcggcagcagacgctgcgcgcgggcatg
gcgcaggagcgcgagcagctcgctaccttgcaacggcagcgtgatcagctcgccgcgcag
cagacggacgcggcgacgcggctggagcaggcgcaggcccgcgaagccggacagcacagc
gagctgcaggcgttgctcggcgcggacgacgaggccgggctgcggcagcgctggcagcag
ctgcaggtgcagggacgggcgctggatcgcctggaacaactggcgcagagccgcgagcag
atggccgaacagatcgccgagctgaccccgcgcctggcgcagctgcacacgcagcacgcc
gccaagaacgatgaaatcatcggcctgcgtgagcgctacaaggtgctcaagcagcaggtt
gccgacaaggaaaagctgctggagcaggagcagcgcattcaggatctggaagcctatcgt
gcccatctgcagccgggcgaagcctgcccattgtgcggctcgcacgagcatccggcggtc
agccagtaccaggcgctggatgtctccgccacgcgccaggcgctggagcagtgccgcagc
gatctggcgcggctggaaagccagggcggcaccctgcgcgacgaactgacccgtctggcc
acgcagatcgcccagctgcagcagcaactggaacaggcacaacagcgcgtcgctcagcag
gacgcgcagtggcagcagcaactggccgagcaggccctgcagatcgccgatggtgcagcg
ctgcgtcagttgcagcgtgagcatgagcagcatctggggcagctgcagcagcgtctcgcc
caggtcgaaacccgccaggccgagctgacgcaggcgcgcagtgctcgtgagattgccgaa
cgagcgctggccgatatgcagcaacgcctggcgctgctggcgcgcgatgaagaaaacctg
caggcgcgtcaacgcgaacagaacgagcgtctgcaggggctggagcaggaactgcggcat
cacgatcaggcgctgctggccagcctcgatggctttgcctcggagttgccggccgacgcc
gacacctggctggccgagcaggccagcgcctggcgcgactggcagcaggctcaggcgcag
caccagcaggtgcaggagcagctgcgtgaaacccagcgtctgctcgccgaagccgaggcc
cgggccgagcaatggcaacagcgctggcagaccgaacaggcccaggcgctgatcgagccc
gagccagtggcgcagcccgagcaggccctgcaaggtgccatcgacagcctggccagcgcg
cagcgcgaaagcgatgccctgcgtggccggcagcagagccagcagagcctgctgcagcaa
ttgcagcagcgcctgagcgaagccgagcagcgctggcagcaggcgctggcggccagcccc
ttcactgacctgcaggcatttctcgacgcgctgctggacgatgaagaacgtgagcgtctg
acgagtttgcaggcgcgtctgcagcaagcccttaccgaggccacgacattgttggccgcc
gccgacgcgcaatggcagcaactgagcacgacgccgcagaccgagctgacgctggccgag
ctggacgagcagctgcaggcgctgcaactgaccttgcgcgagctgagccagcgtcagggc
gagctgcgcgcccagttgcaggcggacgatgcgcggcgcagcagccagcaggcgctgttc
gccgagatcgccgcccaggagagcgagcacgccttgtggcagcagctcaacggcctgatc
ggttcggccgatggcgccaagttccgcaagttcgcccagggcctgaccctcgatcacctg
atccacctggccaatcgccaactgacgcgcctgcacggccgctaccagctggcgcgcaag
agcagcggcgaactggagctggaggtgtgcgacacctggcaggccgacgtggcgcgcgac
tgccgcaccctgtccggcggcgagagctttctggtcagcctggcgctggccctggcgctg
tcggatctggtcagccacaagaccagcatcgactcgctgtttctcgacgagggcttcggt
acgctcgatggcgaaaccctggaagtggcgctcgatgccctggataacctcaacgccagc
ggcaagaccatcggcgtgatcagccacgtcgaggcgatgaaggagcgcattcccgtgcag
ctgcgggtgcacaagggcgtcggcctcggctacagccggctcgacgcacgttttgcggtg
aaggaaggagcgtag
DBGET
integrated database retrieval system
