Ectopseudomonas mendocina ymp: Pmen_3606
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Entry
Pmen_3606 CDS
T00510
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pmy
Ectopseudomonas mendocina ymp
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmy03016
]
Pmen_3606
Enzymes [BR:
pmy01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Pmen_3606
Transfer RNA biogenesis [BR:
pmy03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Pmen_3606
Prokaryotic type
Pmen_3606
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
PUA_3
Motif
Other DBs
NCBI-ProteinID:
ABP86354
UniProt:
A4XYD8
LinkDB
All DBs
Position
complement(3978505..3979425)
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AA seq
306 aa
AA seq
DB search
MAQVKRIRRKVDGIILLDKPRGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFG
EATKFSQYLLDADKGYETVAQLGVTTTTGDAEGEVLERRPVTVGRPEIEALLPRFRGEIK
QIPPMYSALKKDGQPLYKLARAGEVVEREARSVTIARLELLALEGEQARLSVDCSKGTYI
RTLVEDLGQLLGCGAHVAELRRTKAGPFELARTVTLEELEAVHAEGGSEALDRFLQPVDS
GLQDWPLLQFSEHSAFYWLQGQPVRAPEAPKFGMVRVQDHNGRFIGIGEVSDDGRIAPRR
LIYTGA
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggtcaaacgtattcgccgcaaggtcgacggcatcatcctgctcgacaagccg
cgcggctttacctccaacgcggccctgcagaaggtgcgctggctgctcaatgcagagaag
gccgggcataccggcagcctcgatccgctggcaaccggcgtgctgccgctgtgtttcggc
gaggcgaccaagttctcccagtacctgctcgatgccgacaagggctacgagaccgtggcg
caactgggcgtgaccaccaccaccggcgacgccgaaggtgaggtgctcgagcgacgcccg
gtgaccgttggtcgccctgaaatcgaggccctgttgccgcgttttcgtggagaaatcaaa
cagatacctccaatgtattcggccctgaagaaggacggccagccgctgtacaagctggcc
cgtgcaggcgaagtagtggagcgcgaagcgcgttctgttactattgcgcgcctggaattg
ctggccctcgaaggcgagcaggcgcgtctgtccgtggactgcagcaaggggacctacatt
cgtaccctggtcgaggacctcggccaattgctcggttgtggcgcacacgtcgccgaactg
cgtcgaaccaaggccggtcccttcgagctggcgcgtaccgtgaccctggaagagctggag
gcggtgcacgccgaaggtggcagcgaagcgcttgatcgcttcctgcagccggtcgacagc
ggtttgcaggattggccgctgctgcagttttccgagcacagtgcgttctactggttgcaa
ggacaaccggtacgggcaccggaagcgccgaagttcggcatggtgcgcgtgcaggatcac
aatggtcgcttcatcggcatcggtgaagtgagcgacgatgggcgtattgccccgcgtcga
ttgatttataccggtgcgtag
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