Ectopseudomonas mendocina ymp: Pmen_3739
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Entry
Pmen_3739 CDS
T00510
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pmy
Ectopseudomonas mendocina ymp
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmy03019
]
Pmen_3739
Enzymes [BR:
pmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pmen_3739
Messenger RNA biogenesis [BR:
pmy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Pmen_3739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
HA2_N
ResIII
Cas3-like_C_2
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABP86487
UniProt:
A4XYS1
LinkDB
All DBs
Position
complement(4122654..4125188)
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AA seq
844 aa
AA seq
DB search
MNALPIDALLPALRDALSARHEVVLEAPPGAGKTTRVPLALLDAPWLAGQTILMLEPRRL
AARAAAERLASELGERVGETVGYRIRLDSKVGPNTRIEVVTEGILARRLQDDPALEGVGL
VVFDEFHERSLDADLALALTLNGRAMFRGEGSGEAPLKVLLMSATLEGERLAALLGEAPV
LRSEGRMFPVDICWGAPFQPGEWIEPRVLQTVQQALADEPGSLLVFLPGQAEIRRVAEQL
GEALAGRDDILLCPLHGELDLAAQRAAIEPAPAGTRKVVLATNIAETSLTIDGVRVVVDA
GLARVPRFDPASGMTRLDTQRISRASATQRAGRAGRLQPGVCYRLWSQAQHEQLSAYSGA
EILAADLAGLALQLLRWGVTPQELSWLDVPPPAAYAQALDLLGRLGALDERGALNAHGQA
MAELPSHPRIAHLLLRGQALGLGALACDLAALLSERDILRGGGADLHSRLALLSGESRAT
RSAQGGVQRARQLAKQFQGLLKGRLVIGAVSDPEHPRWLGCLLAFAYPDRIAQQRRAGGA
DYRLANGRAAQFAEADALMKHEWLVVADLGSRQGQREERIYLAADLDPALFERELAEQVT
TLEVLDWDEREGVLRAERQRKVGELVLERQALAALDEDTRSRALVGLVRRKGLELLPWTP
ELRQWQARVALLRELDLQQHGQSEWPDLSDAALLASLEQWLAPFLGKVNRLSHFANLDLP
AILQTLLPWPLPQRLDELAPRTLSVPSGSRIAIDYTENPPVLAVRLQELFGLAATPRIAG
GRLGLKLHLLSPARRPVQVTQDLASFWANTYLEVKKDLKGRYPKHYWPDDPLIAEPTARA
KPRK
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccctgcccatcgatgccctgttacctgccctgcgcgatgccttgagcgcccgc
cacgaagtggtgctggaggcgccgcccggcgccggcaagaccactcgcgtgccgctggcg
ctgctcgatgcgccctggctggccggacagaccatcctcatgctcgaaccacgccggctg
gccgcccgcgccgccgccgagcgcctggccagcgagctgggcgaacgggtcggcgagacg
gtgggctaccgcattcgcctggacagcaaggtggggccgaacacgcgcattgaggtggtc
accgaaggcatcctcgcccgccgcctgcaggacgatccggcgctggaaggcgtcggcctg
gtggtcttcgacgaattccacgagcgcagcctggatgccgatctggccctggcgctgacc
ctgaacgggcgcgccatgttccgcggcgaaggcagcggcgaggcgccgctaaaggtgctg
ctgatgtccgccaccctggaaggggagcgtctggcggcgctgcttggtgaggcgccggtg
ctgcgcagcgaagggcgcatgtttccggtggatatttgctggggcgcgccatttcagcca
ggcgagtggatcgagccgcgggtgctgcagacggtgcagcaggccctggccgacgagccc
ggcagcctgctggtgttcctgcccgggcaggccgagatccgccgcgtcgccgagcagctg
ggcgaggcgctggcggggcgcgacgacattctgctctgcccgctgcatggcgagctcgat
ctggccgcccagcgcgccgccatcgagccggcgccggcgggcacgcgcaaggtggtgctg
gccaccaatattgccgagaccagcctgaccatcgacggcgtgcgcgtggtggtggatgcc
ggcctggcgcgggtgccgcgcttcgacccagccagtggcatgacccgtctcgatacccag
cgcatctcccgggcttccgcgacccagcgtgccggccgcgccgggcgtctgcagccgggt
gtgtgctatcggctgtggtcgcaggcgcagcacgagcagctcagcgcctattccggtgcg
gaaatccttgcggccgatctggccgggttggccctgcaactgctgcgctggggcgtgacg
ccgcaggagctgagctggctcgacgtgccgccgccggctgcctacgcgcaggcgctggat
ctgctcggccgcctcggcgcgctggacgaacgtggcgcgctcaatgcccatggccaggcc
atggccgagctgcccagccatccacgcatcgcccatctgctgctgcgtggccaggcgctg
ggcctgggcgcgctggcctgcgatctggccgcgctgctctccgagcgcgacattctgcgc
ggcggcggcgccgatctgcacagtcgcctggccctgctcagcggcgaaagccgcgccacg
cgcagcgctcaaggcggcgtgcagcgcgcccggcagctggccaagcagtttcaggggctg
ctcaaggggcggctggtcattggggcggtgagcgaccccgagcacccgcgctggctcggc
tgtctgctggccttcgcctaccccgaccgcatcgcccagcagcgccgcgccggcggcgcc
gactaccgcctggccaacggccgcgccgcgcagttcgctgaggccgatgcgctgatgaag
cacgaatggctggtggtggccgacctgggtagccgtcagggtcagcgcgaggagcgcatc
tatctcgccgccgatctcgacccggcgctgttcgagcgcgaactggccgaacaggtcacg
acgctggaggtgctcgactgggacgagcgcgaaggcgtgctgcgcgccgaacgtcagcgc
aaggtgggcgaactggtgctggagcgccaggcactggcggcgctggacgaggacacgcgc
agccgcgccctggtcggcctggtgcgacgcaagggcctggagctgctgccctggacgccc
gaactgcgtcagtggcaggcacgcgtggcgctgctacgcgagctcgatttgcagcagcac
gggcagagcgaatggccggacctgtccgatgccgcgctattggccagcctcgagcagtgg
ctggcgccgtttctgggcaaggtcaatcgcctcagccacttcgccaatctcgacctgccg
gcgatcctgcagacgctgctgccctggccgctgccgcaacgtctcgacgagctggcgccg
cgcacgctgagcgtgccgtccggctcgcgcatcgccatcgactacacggaaaacccgccg
gtgctcgccgtgcgcctgcaggagctgttcggtctggccgccacgccgcgcatcgccggc
ggccgcctgggcctcaagctgcacctgctgtcgccggcgcgccggccggtgcaggtcacc
caggatctggccagcttctgggccaacacctacctggaggtgaagaaggacctgaagggg
cggtatcccaagcactactggccggacgacccgctgatcgccgaacccacggcgcgcgcc
aaaccccgcaaatga
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