Ectopseudomonas mendocina ymp: Pmen_4132
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Entry
Pmen_4132 CDS
T00510
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
pmy
Ectopseudomonas mendocina ymp
Pathway
pmy00260
Glycine, serine and threonine metabolism
pmy00460
Cyanoamino acid metabolism
pmy00630
Glyoxylate and dicarboxylate metabolism
pmy00670
One carbon pool by folate
pmy00680
Methane metabolism
pmy01100
Metabolic pathways
pmy01110
Biosynthesis of secondary metabolites
pmy01120
Microbial metabolism in diverse environments
pmy01200
Carbon metabolism
pmy01230
Biosynthesis of amino acids
pmy01240
Biosynthesis of cofactors
pmy04981
Folate transport and metabolism
Module
pmy_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
Pmen_4132
09102 Energy metabolism
00680 Methane metabolism
Pmen_4132
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
Pmen_4132
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
Pmen_4132
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
Pmen_4132
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
Pmen_4132
Enzymes [BR:
pmy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
Pmen_4132
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Cys_Met_Meta_PP
DegT_DnrJ_EryC1
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
ABP86879
UniProt:
A4XZW3
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All DBs
Position
complement(4531727..4532980)
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AA seq
417 aa
AA seq
DB search
MFSKQDQIQGYDDELLAAIDQEERRQEEHIELIASENYCSQRVMEAQGSGLTNKYAEGYP
GKRYYGGCEYVDKVEQLAIDRAKQLFGADFANVQPHSGSSANSAVYLALLNAGDTILGMS
LAHGGHLTHGAKVSSSGKLYNAVQYGLNPATGLIDYDEVERLAVEHKPKMIVAGFSAYSK
TLDFPRFRAIADKVGALLFVDMAHVAGLVAAGLYPNPIPFADVVTTTTHKTLRGPRGGLI
LAKANEEIEKKLNSAVFPGAQGGPLMHVIAAKAVCFKEAMEPEFKAYQQQVIDNAQAMAK
VFIERGYEVVSGGTDNHLFLLSLIKQGLTGKEADAALGRAGITVNKNAVPNDPQSPFVTS
GIRIGTPAVTTRGFKVAQCQALAGWICDILDHLGDADVEAQVAKLVAGLCADYPVYR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcaagcaagatcagattcagggttacgacgacgagttgctcgcggcgatcgat
caggaagaacgccgtcaggaagagcacatcgagctgatcgcctcggaaaactactgcagc
cagcgcgtgatggaagcgcagggcagcggcctgaccaacaagtacgccgagggctacccg
ggcaagcgctactacggtggctgcgagtatgtcgacaaggtcgagcagctcgccatcgat
cgtgccaagcagctgttcggcgccgacttcgccaacgttcaaccgcattccggttcctcg
gccaacagcgccgtgtacctggcgctgctcaatgccggcgacaccatcctcggcatgagc
ctggcccacggcggccacctgacccacggcgccaaggtgtcgtcttcgggcaagctgtac
aacgccgtgcagtacgggctgaaccccgccaccggcctgatcgactacgacgaggtcgag
cgcctggccgtggagcacaagccgaagatgatcgtggccggcttctccgcctattccaag
accctggatttcccgcgctttcgcgccatcgccgacaaggtcggtgcactcctgttcgtc
gacatggcgcacgtcgccggcctggttgccgctggcctgtatccgaacccgattcccttc
gccgatgtggtcaccaccaccacccacaagaccctgcgtggtccgcgcggcggcctgatc
ctggccaaggccaacgaagagatcgagaagaaactcaactccgccgtgttccccggcgct
cagggcggcccgctgatgcacgtgatcgcagccaaggcggtgtgcttcaaggaggccatg
gagcccgagttcaaggcttaccagcagcaggtcatcgacaacgcccaggccatggccaag
gtcttcatcgagcgcggctacgaggtggtgtccggtggcaccgacaaccacctgttcctg
ctcagcctgatcaagcagggcctgaccggcaaggaggccgacgccgcgctcggtcgtgcc
ggcatcaccgtgaacaagaacgccgtgccgaacgacccgcagtcgccgttcgtgacctcg
ggcatccgcatcggtaccccggcggtgaccacccgcggcttcaaggtcgcccagtgtcag
gcgctggccggttggatctgcgacatcctcgaccacctcggcgatgccgatgtcgaggcg
caggtggccaagctggtggccgggttgtgcgcggactacccggtgtatcgctaa
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