Ectopseudomonas mendocina ymp: Pmen_4513
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Entry
Pmen_4513 CDS
T00510
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pmy
Ectopseudomonas mendocina ymp
Pathway
pmy03420
Nucleotide excision repair
pmy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pmen_4513
03430 Mismatch repair
Pmen_4513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmy03400
]
Pmen_4513
Enzymes [BR:
pmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pmen_4513
DNA repair and recombination proteins [BR:
pmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pmen_4513
MMR (mismatch excision repair)
Other MMR factors
Pmen_4513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_22
AAA_11
RHH_1
DUF3553
Motif
Other DBs
NCBI-ProteinID:
ABP87260
UniProt:
A4Y0Z4
LinkDB
All DBs
Position
4949534..4951717
Genome browser
AA seq
727 aa
AA seq
DB search
MQNDPELLLASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAMGASPHSIL
SVTFTNKAAAEMRHRIEQMLGHNPAGMWVGTFHGLAHRLLRAHWQEAALTENFQILDSDD
QQRLIKRVIRELGLDEQRWPAKQAQWFINGQKDEGFRPQHIQAGGDLFLATMRGIYEAYE
AACARTGVIDFSELLLRALDLWRDKPGLLEHYQRRFRHILVDEFQDTNAVQYAWLRLLAK
GGDSLMVVGDDDQSIYGWRGARIENIQQFSSDFPDTQLIRLEQNYRSTAGILKAANALIA
NNNGRLGKELWTDGGDGEPLALYAAFNEHDEARYVVESIEDALRKDGLKRSEIAILYRSN
AQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLDGRGNDAALERIVNVPARG
IGEKTVESIREFARAQDLSMWEAIRRMLAVKALPGRAAGALGGFIELIEGLAEKVMAMPL
HQMTQVVIEQSGLLAYHEAEKGEKGQARVENLEELVSAARAFENDEDDELTPLQAFLTHA
SLEAGDTQAAENEDSIQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQKLVISYAETRRLYGSETYNKVSRFVREIPAPLIQEVRLSNSVSRPVSTSS
MSGGSLFAGSAVPQTPFNLGQRVRHSLFGEGTILNFEGAGAQARVQVNFENEGSKWLMLA
YAKLEAC
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacgaccccgaactcctcctcgcttcgctcaacgacgcccaggtccaggccgtg
gccgccccgctcggccgccagctggtgctggccggcgccggctcgggcaagacccgcgtg
ctggtgcaccgcatcgccttcctgatccaggcgatgggcgcctcgcctcactcgatcctg
tcggtgacctttaccaacaaggccgccgccgagatgcgccaccgcatcgagcagatgctc
ggccacaacccggccggcatgtgggtcggcaccttccacggcctggctcatcgcctgctg
cgcgcgcactggcaggaagccgcgctgaccgagaatttccagattctcgactccgacgat
cagcagcgcctgatcaagcgggtgatccgcgaactgggcctggacgaacagcgctggccg
gccaagcaggcgcagtggttcatcaacgggcagaaagatgaggggttcagaccccagcac
atccaggccggcggtgacctgttcctggccaccatgcgcggcatctacgaggcctacgag
gcggcctgcgcgcgcaccggggtgatcgacttctccgagctgctgctgcgcgccctcgac
ctgtggcgcgacaagccgggcctgctcgaacattaccagcggcgtttccgtcatatcctg
gtggacgagttccaggacaccaacgccgtgcagtacgcctggctgcgtctgctggccaag
ggcggcgacagcctgatggtggtgggcgacgacgaccagtcgatctacggctggcgcggc
gcgcgcatcgagaacatccagcagttctccagcgacttccccgacacccagctgatccgc
ctggagcagaactaccgctccaccgccggcatcctgaaagctgccaacgcgctgatcgcc
aacaacaacggacgcctcggcaaggagctgtggaccgacggtggcgacggcgagccgctg
gccctgtacgccgccttcaacgaacacgacgaagcacgctacgtggtcgaaagcatcgag
gacgccctgcgcaaggacggcctcaagcgcagcgagatcgccattctgtatcgctccaac
gcccagtcgcgggtgctggaagaggcgctgctgcgcgagcgcattccctaccgcatctac
ggcggccagcgcttcttcgagcgcgccgagatcaagaacgccatggcctatctgcgcctg
ctcgacgggcgcggcaacgacgcggcgctggagcgcatcgtcaacgtgccggcacgcggc
atcggcgagaagacggtcgagagcatccgcgagttcgcccgcgcccaggacctctccatg
tgggaggcgatccgccgcatgctcgccgtcaaggcgctgcccggccgtgccgccggcgcg
ctgggtggcttcatcgagctgatcgaaggcctggccgagaaggttatggccatgcccctg
caccagatgacccaggtggtcatcgagcagagcggcctgctcgcctatcacgaggcggaa
aagggcgagaagggccaggcacgggtggagaacctggaggaattggtcagcgccgcgcgc
gccttcgagaacgacgaagacgacgagctgaccccgctgcaggccttcctcacccacgcc
tcgctggaggccggggacacccaggccgccgagaacgaggacagcattcaactgatgacc
ctgcacagcgccaagggcctggaattccccctggtgttcctggttggcatggaggagggt
ctgttcccgcacaagatgagcctggaagaaccgggccgactggaagaagaacgccgcctg
gcctatgtcggcattacccgtgccatgcagaagctggtgatcagctacgccgaaacccgg
cgtctctacggtagcgagacctacaacaaggtgtcgcgcttcgtccgcgaaatccccgca
ccgctgattcaggaagtgcgtctgagcaacagcgtcagccgtccggtgagcaccagctcg
atgagcggtggcagcctgttcgccggcagcgccgtgccgcagacacccttcaacctgggt
caacgggtacgccacagcctgttcggcgagggcaccattctcaacttcgagggtgccggc
gcccaggcacgggtgcaggtgaattttgaaaacgaaggcagcaagtggctgatgttggcg
tacgccaagctggaagcctgttag
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