Prevotella melaninogenica: HMPREF0659_A5025
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Entry
HMPREF0659_A5025 CDS
T01286
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
pmz
Prevotella melaninogenica
Pathway
pmz02020
Two-component system
pmz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HMPREF0659_A5025 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HMPREF0659_A5025 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmz03021
]
HMPREF0659_A5025 (rpoN)
Transcription machinery [BR:
pmz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HMPREF0659_A5025 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
DUF3408
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
ADK96469
LinkDB
All DBs
Position
I:complement(35573..37087)
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AA seq
504 aa
AA seq
DB search
MAQEQVQIQTQKQQQVQRLSQQQMLQVKLLEMPLTELEESVNAELDDNPALEAGGEETDS
IDDNDTVEHSEDDDFDTLQEREERQDALDSALERMRSDDDLPTYDSRQQRNNAEYEEIVY
GDTTSFIDKLNEQVGERELTERQKSILEYLIGSLDDDGLLRKDLDSISDELAIYYGIDAS
TKELEEVLKILQDFDPAGIGARDLQECLLLQIDRKVENGEWEKDSHLYKYIYNILSHHFD
AFKKKHWDKIQSALSLSDLQVEALQREIRKLNPKPGSSMGETQGRNLQQITPDFIIDTED
DGTVTFSLNHGNLPELHVSQTFNDMMETYRNNKANMNRQEKEALLYAKEKVEKAQGFIEA
VKQRRHTLQVTMKAIIDIQRKFFQDGDEADLKPMILKDIADRTGLDISTISRVSNIKYAQ
TRWGTFPLRFFFTDSYTTEDGEEMSTRKIKLALKEVIDKEDKRKPLSDDALAKVMKEKGF
PIARRTVAKYREQLGLPVARLRKE
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggaacaagtacagattcagacccagaaacagcaacaagtgcagcgtctctca
caacagcagatgctgcaagtaaagttgttggagatgccactgacagaattagaggaaagt
gttaatgctgaactcgatgataatcctgccttagaagcaggaggggaggagactgatagc
attgacgacaacgatactgtagagcattcagaagacgatgatttcgacacacttcaggaa
cgagaagaacgacaagatgcgctcgactcggcattggagcgtatgcgttcggatgatgat
cttcctacatacgattcaagacagcaacgaaataatgctgaatatgaggagattgtgtat
ggagacacaacttccttcattgataaactcaatgagcaggtgggagaaagagagcttact
gaaaggcagaagagtatcttggagtatcttatcggtagtcttgatgatgacggactctta
cgaaaagacctcgatagtatcagcgatgagttagctatctactatgggattgacgcgtca
actaaggaattagaggaggtactgaagattctgcaggactttgacccagctggtatcggt
gcaagagacttgcaagaatgtctcttgttgcagatagatcgtaaggttgagaacggtgag
tgggagaaagatagtcatctgtataaatacatctacaatatcctttcgcatcatttcgac
gctttcaaaaagaagcattgggataagattcaaagcgcattgtcgctgtctgaccttcaa
gtagaggcacttcagcgtgagattcgtaagttgaatccgaagccggggtcgtcaatgggt
gagacacaaggacgtaacctgcaacagataacacctgactttatcattgacacagaggat
gatggtacggttactttcagcttaaaccacggcaatctaccagagttgcacgtttcgcag
accttcaacgatatgatggagacctatcgaaacaacaaagctaatatgaatcgacaggag
aaggaggcgttgctttatgccaaagagaaggtggaaaaggcacaaggatttatcgaagcg
gtaaagcaaagacgtcatacgctgcaggtgacgatgaaggctatcatcgatattcagcgg
aaattcttccaagacggagatgaggctgacctcaaaccaatgattcttaaagacattgcc
gaccgtacaggattagacatctctaccatatcacgtgtgagcaacatcaagtatgcacag
acacgttggggtactttccctctgcgtttcttcttcactgatagctatacaacggaagat
ggcgaggaaatgtctactcgtaaaatcaagttggcactcaaagaagtaatcgacaaagag
gacaaacgcaagcctctcagcgatgatgcgcttgctaaagtgatgaaagaaaagggcttc
ccaatagcccgtcgcactgttgccaagtaccgcgaacaactcggtttgcctgtggcaaga
ctgaggaaggagtga
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