Prevotella melaninogenica: HMPREF0659_A5094
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Entry
HMPREF0659_A5094 CDS
T01286
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmz
Prevotella melaninogenica
Pathway
pmz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0659_A5094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmz03019
]
HMPREF0659_A5094
03009 Ribosome biogenesis [BR:
pmz03009
]
HMPREF0659_A5094
Enzymes [BR:
pmz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMPREF0659_A5094
Messenger RNA biogenesis [BR:
pmz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF0659_A5094
Ribosome biogenesis [BR:
pmz03009
]
Prokaryotic type
rRNA helicases
HMPREF0659_A5094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
RecG_N
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
ADK96199
LinkDB
All DBs
Position
I:complement(131311..133233)
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AA seq
640 aa
AA seq
DB search
MKTFEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLP
LLQRIDTSSKETQAIVLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASIDTQIRQLR
HGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTGVPEDRNT
LLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNARDKYLALKRLVDFY
PKIYAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQILVATD
VAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRNIERE
ISKDFVDGTLPSPEEICKKQLFKTMDDILKTDVDEDQIAPYMKDINRQFEYIDKEVVIKK
IVSATFGRFLDYYKNAQEIEKPSSRSAREDSRGARGEGRGSRSRGPRKAESGYKRLFINL
GKADGFYPGEVMQFVNKNVHGKQAVGHIDLLAKQSYIEVPEQDAQKVMQSLDGATYKGRK
VRCNDAEEGGHGRSSNSRSAGGNSRSAGGRGGYGSRGEGRQESRERKGRGRRQYDDNPFG
GQHKFKKDDWKELMKGGPAKLKGEEPDFSEEGWARRRPKK
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
ttgaagacatttgaagagttaggtgtgagcgaagagattcgtcgcgccattagtgagctt
ggatttgaacatccaatgcctgtacaggaagaagtaatcccttatttacttggtaatcgt
aacgacgtcatcgcactggcacagactggtacgggtaagacggctgcattcggtttgcct
ttgctgcaacgtattgatacaagcagcaaggagacgcaggctatcgtacttagtcctacg
cgtgaactttgtttgcagattgccgatgacctaaaggaattcagtaagtatatccctcat
ttgcatatcgcagctgtctatggtggtgcatctatcgacacacagattcgccagttgcgt
catggtgtacagattatcgtggctacaccgggccgactgattgaccttatgcaccgtggt
aaggctcgtcttgacaaggttagaaacgttgttttggacgaggctgacgagatgttgaac
atgggtttccaagagagtatcactgagatattgaccggtgtacctgaagatcgtaacaca
ttgttattctcggctacgatgagtcgtgaggtagagcgtgttgcaaagggttatctacat
gactataaagagattgtagtgggcagccgtaacgagggtgctgagagtgtaaaccatatt
tattatatggtgaatgcacgcgacaagtaccttgccttgaagcgattggttgacttctat
ccaaagatttatgcgattgtattctgccgtacaaaggttgagacacaggagattgctgac
aagttgattaaggacggatacaatgccgaggcgttgcatggcgacctctcgcagcagcag
cgtgacctcacgatgcagaagttccgctcacatctcacacagattctcgtcgctacagac
gttgcagcacgtggattggatgtgaacgacttgacacacgttatcaactatggtctccct
gatgatatcgagaactacacccaccgttctggccgtacgggtcgtgcaggaaagaagggt
acttctatctcgattattcactcacgcgagaagtataaggtacgtaatattgaacgcgaa
atcagtaaggactttgttgacggaacactgccttcaccagaggaaatctgcaaaaagcag
ctgtttaagacaatggatgacatcctgaagacagacgttgatgaggaccagattgcacct
tatatgaaggatatcaaccgccaattcgagtatatcgataaggaggttgtcatcaagaag
attgtttctgcaaccttcggtcgcttccttgactattataagaatgctcaggagattgag
aagccatcatcacgtagtgcacgtgaagatagccgtggcgcaagaggtgaaggcagagga
agccgcagccgtggtccacgtaaggcggagagtggttataagcgactctttatcaatctc
ggtaaggcagatggtttctatccgggtgaggtgatgcagtttgtcaataagaacgtgcat
ggtaagcaggcagtaggacatatcgacctccttgctaagcagagctacatcgaagtgcca
gagcaggacgcacagaaggtgatgcaatcgctggacggtgcaacctataaaggtcgtaag
gtgcgttgtaacgatgccgaagaaggtggtcatggtcgttcgtctaatagccgttcagca
ggtggcaacagtcgctctgcgggtggacgtggcggttacggcagccgtggcgaaggccgt
caagagtctcgtgagcgcaagggccgtggtcgtcgccagtatgatgataatcctttcgga
ggacagcataagttcaagaaagatgattggaaggaacttatgaaaggtggtcctgctaag
ttgaaaggcgaagagcctgacttttctgaggaaggatgggcaagacgcagaccaaagaag
taa
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