Prevotella melaninogenica: HMPREF0659_A6008
Help
Entry
HMPREF0659_A6008 CDS
T01286
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmz
Prevotella melaninogenica
Pathway
pmz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF0659_A6008 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmz03400
]
HMPREF0659_A6008 (mfd)
Enzymes [BR:
pmz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0659_A6008 (mfd)
DNA repair and recombination proteins [BR:
pmz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HMPREF0659_A6008 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
AAA_16
Zeta_toxin
Cas3-like_C_2
AAA_22
TniB
Motif
Other DBs
NCBI-ProteinID:
ADK96371
LinkDB
All DBs
Position
I:complement(1264766..1268302)
Genome browser
AA seq
1178 aa
AA seq
DB search
MKIQDIQKLYAMLPQAGAIQKIQKDKSIRTVFLQGLVASAAPMFFASIAERWKTTTVFVL
NDNDEAGYFYNDLKTIAMPADGEGKVAEVLFFPSSYRRAVKYGQRDAGNEILRTEVLTRL
SALASDADNALPLYIVTEPSALSELVVSKKQLDERRLTLTVDQHIDIVEVEKTLRSFGFT
ETDYVYEPGQFAVRGSIIDVYSFSNELPFRIDFFGDDIETIRNFEVETQLSTEKLTRVEI
VPELTTMSEEKVPFLQFLPEDAVLAFKDFLYVRDAIDNIYQEGFTNQALTEKLEGKTELE
QRELEVAFRKEGQLVPASRWMNDALDFRRIEFGINYSSSDLAKKKDGSRATINFSTSPQP
LFHKNFDLLSKTLRDYLIKGYKLYIFADSEKQTVRLRDIFDSLSDTNVSPDSENLSVAEL
SGEGQDATVGALPFTPVNRTLHEGFVDSTLKVCFFTDHQIFDRFHKYNLKSDKARQGKMA
LTMKELQEMEPGDFLVHVDFGIGKFAGLVRVPAGDSYQEMIRLVYQHNDIVDVSIHSLYK
ISKYRRGDSGEPPRLSVLGSGAWDRLKEKAKKRIKDIARDLIKLYAKRRREKGFAFSPDS
FMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKTEVAIRAAFKAAV
DNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQVLEDLAEGKIDIL
VGTHKLIGKSVKWHDLGLLIIDEEQKFGVSTKEKLRQLKTNVDTLTMSATPIPRTLQFSL
MGARDMSIMRTPPPNRYPIQTEIASFSHEVIADAINFEMSRNGQVYFVNDRISNLPEIAN
LIKKYVPNCRIAIGHGQMKPEELEEIVMGFMNYDYDVLLSTTIVENGIDISNANTIIIND
AHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNPEARRRLEALETFSDLGSGFNLAM
QDLDIRGAGNLLGSEQSGFMEDLGYETYQKILNQAVMELKNDEFQDLYEEEMDEGKQITG
DDFIDDCAVESDLEMYFPDNYVPGSSERMLLYRELDNIEKDEDLDAYRKRLQDRFGPVPR
QGEELMQVVALRRVGKRLGCEKIILKQGRMQMQFVSNPNSVYYQSAAFDKVLNYIGYHPR
RCNLKERNGKRSMVVSDVKTVGEGVKVLRAIEQGNKMS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaagatacaagacatacagaaattatatgctatgctgccacaggcaggagcgatacaa
aagatacagaaagataagtcgataagaactgtttttctgcaaggactcgtggcttcagct
gctccgatgttctttgcatcaatagctgaacgatggaagactacgactgttttcgtgttg
aatgacaatgatgaggcgggttatttctacaatgacctcaagacaattgctatgcctgca
gatggtgaagggaaggtggcagaggtgctgttttttccatcgtcttatcgtcgtgcagtg
aaatatggacagcgtgatgcgggtaatgaaatcctgcgtacagaggtgctgacacgtctt
tcagcccttgcctcggatgctgacaacgctctaccgctttatattgtcactgagccatca
gccctatcagaacttgttgtatcaaaaaaacagttggatgaacgtcgtttgacattgact
gtggaccagcatattgatattgtggaggtagagaaaaccttacgttcttttggttttaca
gagactgattatgtttatgagccaggtcagtttgctgtgcgtggtagtattattgatgtc
tattccttctcaaacgaactccctttccgtatcgacttcttcggcgatgacattgaaacc
attcgcaactttgaagtggagacgcagttgtctacagagaagctgacacgtgttgagatt
gttccagagctgacaacgatgtcagaagagaaggtgcctttccttcagttcttgccagaa
gatgccgtgttggcatttaaggacttcctctatgtgcgtgatgcgattgataatatctat
caagaaggctttactaatcaggctctgacagagaagttagagggtaagacggaattagaa
cagcgtgaattggaagtggctttccgtaaggaagggcaactggtgccagcctcacgttgg
atgaatgatgcgcttgacttccgtcgtatagagtttggtatcaattattcctcttcagac
cttgcaaagaagaaggatggttcacgggctactattaacttcagtacctcgccacaacca
ctcttccacaagaactttgacttgctgtctaagacccttcgtgactatcttataaaaggt
tataaactttatatctttgcagatagcgagaagcagactgtacgtttgagagatatcttc
gattcattgtcagatacaaatgtctcacctgactctgagaatctgtctgtagctgaactg
tctggggaggggcaggatgcgacggtgggagctttaccttttacacctgtcaaccgaacg
ttgcatgaaggttttgttgatagtacgctgaaggtatgtttctttaccgatcatcagatt
tttgaccgtttccataagtacaatctcaagtcagacaaggcacgtcaaggtaagatggct
ttgacgatgaaagagctgcaagaaatggaacctggtgacttcttagtgcatgttgacttt
ggaataggtaagtttgctggtctggttcgtgtgcctgctggcgactcttatcaagagatg
atacgtctggtttatcagcataatgacattgtagacgtatctattcactcgctctataag
attagtaagtatcgtcgtggtgatagtggtgaaccaccacgattgtctgttcttggttca
ggtgcttgggatcgactgaaagaaaaggcgaagaagcgtatcaaggatattgcacgcgat
ctcataaaactctatgctaagcgacgtcgtgaaaaaggatttgccttttctccagactcg
tttatgcagcatgaattggaggcttcattcctttatgaggatacgcccgaccagttgaag
gctacacaagaactcaaacaagatatggaaagcgcacgtccgatggaccgtctggtttgt
ggtgacgtgggatttggtaagacagaggtggctatccgtgcagctttcaaggctgctgtg
gataataagcaggtggctgtattagtacctacaaccgtgttagctttccagcattaccaa
actttcaagaagcgattgaaggatatgcctgtgcgtgtcgactacctctcacgtgctcgc
agtgctaaacaaacaaaacaggtgttggaggatttggcagagggaaagatagatattctt
gttggtacgcataagttgatagggaagtcggtgaagtggcatgacctcggactacttatc
attgacgaagagcagaagttcggtgtgtcgacaaaggagaaacttcgccaattaaaaaca
aatgttgacacccttacgatgtcggcaacgcctatcccacgtacgctacagttttcactg
atgggtgcacgtgatatgagtattatgcgtacaccgccacccaatcgttatcctattcag
accgaaatagcttctttttcacatgaagtgatagcagatgcaatcaactttgagatgagc
cgtaatggacaggtttactttgtaaatgaccgcatcagcaatcttccagagatagcaaat
cttattaaaaagtatgtgccaaactgccgtatcgctatcggacatggacagatgaaacct
gaagaattggaggagatagtgatgggctttatgaactatgactatgacgtactgctttca
acaacgattgttgagaatggtattgatatttccaacgccaatactattatcattaacgat
gctcatcgtttcggactctccgacctgcaccagatgcgtggtcgtgtgggacgttctaat
aaaaaggctttctgttatctacttgctcctcctttggctgcattaaacccagaggcgcgt
cgtcggctggaggctttggagaccttctccgacctcggtagtggatttaatcttgcgatg
caggaccttgatatccgtggtgctggtaacctcttaggctctgagcagagtggatttatg
gaggatttgggatacgagacctatcagaaaatcctcaatcaggcggtgatggagctgaaa
aatgatgagttccaagatttgtatgaagaggagatggacgaaggaaagcagattacgggt
gatgactttattgatgattgtgccgtagagagcgaccttgaaatgtacttccctgataac
tacgtgccgggtagttcagagcgtatgctgctgtatcgtgaactggataatatagaaaaa
gacgaagacctcgatgcctatcgtaagcgactccaagaccgtttcggtcctgttccacgt
caaggtgaggaactgatgcaggtcgttgcacttcgtcgtgtgggtaagcgattgggttgt
gagaagattatccttaagcaaggacgtatgcagatgcaatttgtttctaatcctaatagt
gtctactatcagagtgctgcctttgataaggttctcaattacatcggttatcatcctcgt
cgttgcaatctgaaggaacgaaatggcaaacgttctatggtagtcagtgatgtgaagacg
gtaggagaaggagttaaagttttaagagcaatagaacaagggaacaaaatgtcttga
DBGET
integrated database retrieval system
