Prevotella melaninogenica: HMPREF0659_A6744
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Entry
HMPREF0659_A6744 CDS
T01286
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pmz
Prevotella melaninogenica
Pathway
pmz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0659_A6744 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmz03021
]
HMPREF0659_A6744 (rho)
03019 Messenger RNA biogenesis [BR:
pmz03019
]
HMPREF0659_A6744 (rho)
Transcription machinery [BR:
pmz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HMPREF0659_A6744 (rho)
Messenger RNA biogenesis [BR:
pmz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HMPREF0659_A6744 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
OB_RNB
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
ADK96885
LinkDB
All DBs
Position
II:complement(428968..430923)
Genome browser
AA seq
651 aa
AA seq
DB search
MLSKEELLEKEVSELEAIAQSTGAVYSPGDDKDKLVYAILDRQAEEAGTAHPLESKRKRT
RIARKDTDRVYSVHGEEGENFDVQKNKNTATSQPSLFKELPETKDDKTEEKSPEEILASI
PKHRGRKSKAELEAIAAAEAAIKAKAEEAQQTEEPVEEAPVENVEPSAPEDFIPEDQFSN
VPQQEEGEGKEELLARLQEKVNAHNMNMEPAGYPVLPDGVWAGDPGDGTDFIPVVDLPIE
DQGIVPNYDMFDQPTTPAQLPSTPVYDNAPVANNANYDFSDLIKANGVLEVMPDGYGFLR
SSDYNYLSSPDDVYIANNQIKQYGLKTGDVVECHVRPPHEGEKYFPLTSIDKINGRKPSE
VRDRIPFEHLTPLFPEEKFTLCGDPRTTNLSTRIVDLFSPIGKGQRALIVAQPKTGKTIL
MKDIANAIAANHPEAYLMMLLIDERPEEVTDMARTVNAEVIASTFDEPAERHVKIAGIVL
EKAKRMVECGHDVVIFLDSITRLARAYNTVAPASGKVLTGGVDANALQKPKRFFGAARNI
EGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRSLSNKRIFPAVNLVASSTRR
DDLLQDRTTLDRMWILRKYIADMNSIEAMNSIHDRMRRTENNEEFLLSMND
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgttaagcaaagaagaattattagagaaagaagtttctgaacttgaagctattgctcag
agtactggtgctgtttactcacctggagatgataaggataagctcgtttatgccatcctt
gaccgccaggcagaagaggcaggtacagcacatcccttagaatcaaagcgtaagcgtacc
agaatagcacgaaaagataccgacagggtttattcggtacatggtgaagaaggggaaaac
ttcgacgtacagaagaataaaaacacggcaacaagtcagccttcattattcaaagagtta
cctgaaacaaaggacgataagactgaagagaaatctccagaagaaatattagcatctatt
ccaaagcatcgtggtcgtaaatctaaggctgaattagaggctattgcagctgcagaagca
gctataaaggcaaaagcagaagaggcacagcagactgaagagcctgtagaggaggctccc
gtagagaatgtagagccatctgctccagaggatttcatcccagaagatcagttctctaac
gtaccacagcaggaagagggtgaaggtaaagaagaattattggcacgccttcaggagaag
gttaacgcacataatatgaatatggaaccagctggttatcctgtattacctgatggtgta
tgggcaggtgacccaggcgatggtacagatttcattccagttgttgacctaccaattgaa
gatcagggtattgttccaaactatgatatgtttgatcagcctacaactcctgctcagttg
ccgtcaactccggtctatgataatgctccagttgcaaacaatgcgaactatgatttctct
gatcttatcaaggcaaacggcgttcttgaggtaatgcctgatggttatggcttcctccgt
tcaagcgattataattacttatcatcacctgatgatgtgtatattgcaaacaatcagatt
aagcaatatggtctgaagacaggtgacgttgtagaatgccacgtacgtccaccacatgag
ggcgagaagtatttcccactgacaagcattgacaagattaatggtcgtaagccttctgag
gtacgtgaccgtatacctttcgaacatcttacaccactcttcccagaggagaagttcaca
ctctgtggcgatcctcgtacaactaatctttcaacacgtattgtagatctcttttcacca
atcggtaagggacagcgtgcattgattgttgcgcagccaaagacgggtaagactatcttg
atgaaggatattgcaaatgccattgcagccaaccatccagaggcttacttgatgatgctc
ttgattgatgagcgtcctgaggaggttaccgatatggcacgcacagtaaatgcagaggtc
attgcttcaacatttgatgagcctgcagaacgccacgttaagattgccggtatcgttttg
gagaaggcaaaacgcatggttgaatgtggtcatgatgtagttatcttccttgactcaatc
actcgtttggcacgtgcttacaacactgtagcaccagcatctggtaaggtattgactggt
ggtgtggatgccaatgcattgcagaagccaaagcgtttcttcggtgctgcacgtaatatt
gaaggtggtggctctttgactatcattgcaacagccttgattgatactggttccaagatg
gatgaagttatcttcgaggagttcaagggaacaggtaacatggagttgcagcttgaccgt
agcttgagtaacaagcgtatcttcccagctgttaacttggttgcttcaagtacacgtcgt
gatgacctccttcaggatcgtacaacacttgatcgtatgtggattctccgcaagtacatt
gctgacatgaattctatcgaggcaatgaactctatccacgaccgtatgagacgtacagag
aacaatgaggagttcctgttgtcaatgaatgattaa
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