Polaromonas naphthalenivorans: Pnap_0114
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Entry
Pnap_0114 CDS
T00459
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pna
Polaromonas naphthalenivorans
Pathway
pna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pnap_0114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pna03019
]
Pnap_0114
03400 DNA repair and recombination proteins [BR:
pna03400
]
Pnap_0114
Enzymes [BR:
pna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pnap_0114
Messenger RNA biogenesis [BR:
pna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pnap_0114
DNA repair and recombination proteins [BR:
pna03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pnap_0114
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABM35439
UniProt:
A1VIG1
LinkDB
All DBs
Position
complement(122049..123968)
Genome browser
AA seq
639 aa
AA seq
DB search
MSGPPLSSLPISSAPSDQPTPLDVLGQVFGYSDFRGPQQAIVEHVIAGGDALVLMPTGGG
KSLCYQIPAIARQNAGHGVTIVISPLIALMHDQVGALLEAGVSAAFLNSTQTFEESSQLE
KQLLRNELTLLYAAPERINTPRMKGLLASLHERGLLSLFAIDEAHCVSQWGHDFRPEYRS
LSLLHETFPDVPRMALTATADALTRQDMIERLKLEDARLFLSSFDRPNIRYTIVEKTDAT
RQLLRFIQAEHHGEAGIVYCQSRKRVEEIAGMLEDAGIKAMAYHAGLDAKLRQQRQDRFL
REDGCVMVATIAFGMGIDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGLPADAWMVYGLQ
DVVNQRRMIDTSEVASEEFKAVMRGKLDALLTLAEGTRCRRVSLLGYFGEASEPCGNCDN
CLTPPAVWDATEAARKMLSCIYRVQQASGISFGAGHIMDILRGKPTEKVVQYGHDQLSTF
GIGADLAEPQWRGVLRQLIASNLVRVNAEAFNTLQLMPDARQVLKGEVSVLLRQQAASAK
AERTRRGSKSTVKTSVKGMAEATLNAGALERLGRLKAWRTDVAREHNLPPFVIFHDATLR
AIAEQAPQDLHALSGISGMGVKKLAAYGAEVLRVCAEPG
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
ttgtctggcccgcccttgtcctcattgcccatttcttcagccccttcagaccagcccacg
ccgctggacgtgcttggccaggtttttggctactccgactttcgcggcccgcagcaagcc
atcgtcgagcatgtgattgctggcggcgatgcgctggtcttgatgcccacgggcggcggc
aagtcgctgtgctaccagattccggccatcgcccggcaaaacgccggccacggcgtgacc
atcgtgatctcgccgctgatcgcgctgatgcacgaccaggtcggcgcgcttctggaagcg
ggcgtgtcggcggcgttcctcaactccacccagactttcgaggaaagcagccagctggaa
aagcagctgctgcgcaatgagctgacgctgctctacgccgcgcccgagcgcatcaacacg
ccgcgcatgaagggcctgctggcgtcgctgcacgagcgcgggctgctaagcctctttgcc
atcgacgaggcgcattgcgtgagccagtggggccacgacttccggcccgagtaccgcagc
ttgagcctgttgcacgagaccttccccgacgtgccgcgcatggcgctgaccgccacggcc
gacgcgctgacgcgccaggacatgatcgagcggctcaagctcgaagacgcgcgcttgttt
ctaagcagctttgaccggcccaacatccgctacaccatcgtcgaaaagaccgacgcgacg
cgccagctgctgcgcttcatccaggccgagcaccacggcgaagcgggcatcgtctattgc
cagtcgcgcaagcgcgtcgaggaaatcgccggcatgctcgaagacgcgggcatcaaggcc
atggcctaccacgccgggctcgatgccaagctgcgccagcagcgccaggaccgtttcctg
cgcgaagacggctgcgtgatggtggcgacgattgccttcggcatgggcatcgacaagccc
gacgtgcgcttcgtcgcgcacctggacatgccaaagaacatcgaaggctactaccaggaa
accggccgcgccggacgcgacggcttgcccgctgacgcctggatggtctatggcctgcag
gacgtggtgaaccagcgccgcatgatcgacaccagcgaagtcgccagcgaggagttcaag
gcggtgatgcgcggcaagctggacgcgctcttgacgctggccgagggcacgcgctgccgc
cgcgtcagcctgctgggctattttggcgaggccagcgagccgtgcggcaactgcgacaac
tgcctgaccccgccggccgtgtgggacgcgaccgaggcggcgcgcaagatgctcagctgc
atctaccgcgtgcagcaggccagcggcatcagctttggcgccgggcacatcatggacatc
ctgcgcggcaagccgaccgaaaaagtcgtgcagtacggccatgaccagctcagcaccttc
ggcatcggcgccgacctggccgagccgcagtggcgcggcgtgctgcgccagctgatcgcc
agcaacctggtgcgcgtcaatgccgaggccttcaacacgctgcaactgatgcccgacgcg
cgccaggtgctcaagggcgaagtcagcgtgctgctgcgccagcaggccgccagcgccaag
gccgagcgcacgcggcgcggcagcaaatcgacggtgaaaacatcggtcaagggcatggcc
gaagcgacgctgaacgccggcgcgctggaacgccttggccgcctgaaagcctggcgtacc
gacgtcgcccgggagcacaacctgccgccattcgtgatcttccacgacgccacgctgcgc
gcgattgccgagcaggcgccgcaagacctgcacgcgctgagcggcatcagcggcatgggc
gtgaagaagctggcagcgtatggcgccgaggtgctgcgggtgtgcgccgagccggggtaa
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