Polaromonas naphthalenivorans: Pnap_1244
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Entry
Pnap_1244 CDS
T00459
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pna
Polaromonas naphthalenivorans
Pathway
pna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pnap_1244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pna03019
]
Pnap_1244
Enzymes [BR:
pna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pnap_1244
Messenger RNA biogenesis [BR:
pna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pnap_1244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
ABM36559
UniProt:
A1VLN1
LinkDB
All DBs
Position
complement(1334837..1336552)
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AA seq
571 aa
AA seq
DB search
MKFEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGGDLLGGAQTGTGKTAAFTLPLL
QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQ
IEKLRRGVDILVATPGRLLDHASQGTLDLSQVQILILDEADRMLDMGFIHDIKKVLALVP
KQKQTLLFSATFSDEIRELANGLLRNPLSIQVTPRNTTVQRITQTIHPVGRSKKKALLTH
IINEHNWSQVLVFTRTKFGANNVAEHLTKAGIPAMALHGNKSQTARTQALQGFKNGDIRA
LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGQAVSLVCLDEEGFMQ
DIERFTKQNIENIVVPGFEAEPGEKAEPLAMGRQTIWGGLGKPPSRDVMQAAAKAARSEM
MTRIRDTKGAQPARGGNAGAGGRGGRAPAGNSAGAGRGGNGGGGFAGNGGGNADRRGPAP
RQNASYPQGGQPAFSQPRSAHAPAPRQRDSESRNDFDSQQPASHASSGFPSSGQPTGNRN
NFRGGPRTGGGAGDRSNGPRRSGGPGSFTGR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagaattgaatctggccccggccattttgaaggccgtgcttgagcagggc
tacgatacccccacgccgatccaggcacaggctattcccgccgtgcttgctggcggtgat
ttgctgggcggcgcccagaccggcaccggcaagacggcggcgttcacgctgccgctgctg
cagcgcctctcgaccgaaccgcgcctgaccaaccggcgcggcgtcaacgcggttcgcgcc
ctcatcatgaccccgacgcgcgaactcgccgcgcaggtcgaggaaagcgttcgcacctac
ggcaaatacctggacctcacctcgatggtaatgttcggcggtgtcggcatgggcgcgcaa
atcgaaaaactgcgccgtggcgtggacatcctggtggccacccccggccgcctgctggac
catgccagccaaggaacgctggacctgagccaggtgcagatcctgatcctcgacgaagcc
gaccgcatgctggacatgggcttcatccatgacatcaagaaagtgctggcactggtgccc
aagcagaagcagacgctgctgttttccgccaccttcagcgatgaaatccgcgaactggcc
aatggcctgctgcgcaacccgctgtccatccaggtcacgccgcgcaacaccacggtgcag
cgcatcacgcagaccatccacccggtcggccgcagcaagaagaaagccctgctgacgcac
atcatcaacgaacacaactggagccaggtgctggtgttcacgcgcaccaagttcggcgcc
aacaatgtggccgagcatctgaccaaggccggcattcccgccatggcgctgcacggcaac
aagagccagacggcccgcacgcaagccctgcagggcttcaagaacggcgacatccgcgcg
ctggtggcaaccgacattgccgcgcgcggcattgacatcgacgagttgccacacgtcgtc
aactacgaaatcccgaacgtcagcgaagactatgtccaccgcatcggccgcaccggccgc
gccggcaacagcggccaggccgtcagcctggtgtgcctggacgaagaaggcttcatgcag
gacatcgagcgcttcaccaagcagaacatcgaaaacatcgtcgttcccggcttcgaagcc
gaacccggcgaaaaagccgagccgctggccatgggccgccagaccatctggggcggcctg
ggcaagccgccaagccgcgacgtgatgcaggccgccgccaaggcagcccggtccgaaatg
atgacccgcatccgcgacaccaagggcgcccagcctgcgcgtggcggcaatgccggcgcg
ggtggacgcggtggccgcgcccctgccggcaacagcgcaggcgctggccgtggcggcaat
ggcggtggcggcttcgccggcaacggtggcggcaatgccgaccgccgtggaccggcaccg
cgccagaatgccagctacccacaaggcggccagcccgctttcagccagccacgaagcgcg
catgccccggcgccgcgccagcgcgacagcgagtcccgcaatgacttcgacagccagcag
ccggccagccacgcgtcgtccggattcccgtcgtcaggccagcccacaggcaaccgcaac
aacttccgtggcggcccccgcaccggcggcggcgcgggtgaccgaagcaacggacctcgc
cgttcaggcggcccgggctcgttcaccggccgataa
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