Polaromonas naphthalenivorans: Pnap_1420
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Entry
Pnap_1420 CDS
T00459
Name
(GenBank) 3' exoribonuclease
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pna
Polaromonas naphthalenivorans
Pathway
pna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pnap_1420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pna03019
]
Pnap_1420
03016 Transfer RNA biogenesis [BR:
pna03016
]
Pnap_1420
Enzymes [BR:
pna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Pnap_1420
Messenger RNA biogenesis [BR:
pna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pnap_1420
Transfer RNA biogenesis [BR:
pna03016
]
Prokaryotic type
tRNA degradation factors
Pnap_1420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
DNA_pol3_a_NI
DUF5813
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
ABM36734
UniProt:
A1VM56
LinkDB
All DBs
Position
1507927..1510038
Genome browser
AA seq
703 aa
AA seq
DB search
MSIFNKVTKSFQWGQHKVTMETGEMARQAGGAVLLDMDGTVVLATVVAKSDAKPGQDFFP
LTVDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVL
SLNPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYINGEYVLNPGKTQLQNSTMDLV
VAGTEAAVLMVESEAKQLSEEIMLGAIVFGHEQGNIAINAIHELVRDAGKPVWDWKAPAK
DEVLIAKVVALAEEKLVAAYQIRNKQARTHATRQVTTWTKMGLKAEGVEFDGVAVEGMLF
DIEAKIVRSQILAGDPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGT
ERDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPSK
EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVL
TDILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGQANAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINIEEDGTITIA
SNDSAKADEAKRRIAEITAEVEIGKVYEGAITKILDFGALVNLMPGKDGLLHISQIAHER
VEKVTDYLSEGQIIKVKVLETDEKGRVKLSMKALLDRPSQHQG
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgagcattttcaataaagtcaccaaatcattccaatggggccagcacaaggtcacgatg
gaaaccggcgaaatggcgcgccaggctggcggcgccgtgctgcttgacatggacggcacc
gtcgtgctggccaccgtggttgccaagagcgacgccaagcccggccaggatttctttccc
ctgacggtcgattaccttgaaaagacctacgccgcaggccgcattcccggcagcttcttc
aagcgcgaaggccgccccagcgagtttgaaacgctgacgtcgcgcctgatcgaccgcccg
attcgcccgctgtttcctgaaggcttcttcaatgaagtgcaggtcgtgatccatgtgctg
tcgctgaacccggaagtcgaaggcgacattcccgcgctgatcgcttcgagcgccgcgctg
tcaatttccggcattccgttcaacggcccgattggcgccgcccgcgtggcctacatcaat
ggcgagtacgtgctgaaccccggcaagacccagttgcagaattccaccatggacctggtg
gtggccggtaccgaagccgccgtgctgatggtcgagtccgaagccaagcaactgtctgaa
gaaatcatgctcggcgccattgtgtttggccacgagcagggcaacatcgccatcaatgcg
attcacgaactggttcgcgatgccggcaagccggtgtgggactggaaagcgcccgccaag
gacgaggtgctgatcgccaaggtggttgcgctggccgaggaaaagctggttgccgcctac
cagatccgcaacaagcaggcccgcacgcacgccacgcgccaagtgaccacctggaccaag
atgggcctgaaagccgaaggcgttgaattcgacggcgttgccgttgaaggcatgctgttc
gacatcgaagccaagattgtccgcagccagattctggccggcgatccgcgcatcgacggc
cgcgacacgcgcaccgtccggccgattgaaatccgcaacagcgtgctgccccgcacccac
ggttcggccctgttcacgcgtggcgaaacccaggcgctggtcgtgaccacgctgggcacc
gagcgcgacgcgcagcgcatcgatgcattgagcggcgactacgaagaccgcttcatgctg
cactacaacatgcctccgttcgccaccggcgaaaccggccgcgtgggtagcccgaaacgc
cgcgagattggtcatgggcggcttgcgaagcgcgcgctgatcgccgttctgccgagcaag
gaagaattcccgtacaccatgcgcgtggtcagcgagatcaccgaatccaatggttcgtcg
tccatggcttcggtctgcggcggctgcctgtcgctgatggatgctggcgttcccatgaag
gcccatgtggccggtatcgccatgggcctgatcaaggaagacaaccgttttgccgtgctg
accgacatcctgggcgatgaagatcatctgggcgacatggacttcaaggtcgccggcacc
acgttcggcatcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaggtcgcgctggcccaggccaaggaggcgcgcatgcacattctgggcaagatgcag
gaagccatgggccaggccaatgcggaagtctctgacttcgcgccgcgcctgtatgtcatg
aagatcaaccccgagaagatccgcgacgtgatcggcaagggcggcgccgtcatccgcgcg
ctgaccgaagagaccggcacgcagatcaacatcgaggaagacggcaccatcaccatcgcc
tcgaacgacagcgccaaggccgacgaagccaagcgccgcatcgccgaaatcactgccgaa
gtcgaaatcggcaaggtctatgaaggcgctatcaccaagatcctcgatttcggtgcgctg
gtcaatctcatgcccggcaaggacggtttgctgcacatcagccagatcgcccacgagcgt
gtcgagaaagtcaccgactacctgagcgaaggccagatcatcaaggtcaaggttctggaa
accgacgaaaaaggccgcgtcaagctgtcaatgaaggcattgctggaccgtccttcccag
catcagggctga
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