Polaromonas naphthalenivorans: Pnap_2193
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Entry
Pnap_2193 CDS
T00459
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
pna
Polaromonas naphthalenivorans
Brite
KEGG Orthology (KO) [BR:
pna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pna03400
]
Pnap_2193
Enzymes [BR:
pna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pnap_2193
DNA repair and recombination proteins [BR:
pna03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Pnap_2193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ABM37501
UniProt:
A1VPC3
LinkDB
All DBs
Position
complement(2337008..2340319)
Genome browser
AA seq
1103 aa
AA seq
DB search
MTAAYECNGQPVSADAFYAIACDPRRSVAIEACAGAGKTWMLVSRIVRALLDGANAPDPA
SGTPREPVRPHEILAITFTKKAAGEMRERLDEWLQKFTHADDETLRQELIMRGVSSQKSL
QSNADMRRQLSNLYRSMLASGRAVQIRTFHSWFAALLRSAPVAVLHRLGMPVNYQLLEDD
APARALVWRRFYAALAKDALLKADFEALVLGHGRHQADKALQSALDKRTEFVLADEKGVV
DASVQPFDVQFPEFAGLAAPQDCLAPGGPHHGLLLAAAKALGRASAPSFSAKGVELEQAL
GAQDRPGIFSALLTDKGTPRKFGDKIVGIDTVRQAQELVLRVQAACQQHEAWLHQQRMAR
LSRLLIAQYNQLKREHGWVDMNDVERAALVMLGDPVLAGWVQERLDARIKHLMIDEFQDT
NPLQWQALSAWLSGYGGAGAAPSVFLVGDPKQSIYRFRRAEPQVFRAAQAFVVEGLGGDL
LSCDHTRRNALAVIDTVNAVMGHARTVDGYDGFREHTTDSAKAGATGCLPAISRQREGAD
ADTSPEAGWRDSLSTPRELPEETLRTLEARQAAAWISRQLATGLKPSDVMVLSRKRAGLL
PLQEALRALHIAAQIGEKTDLIDCCEVLDVVALLDVLVSPQHDLSLARALRSPLFGLLDA
SLVQLALLQKELKLPWSELLQKTELLAPELHALVPFLARWKGWLDSLPPHDALQKMYDDG
DVLARFAAAAPAAQRPAVLANLRALLGVALGRDGGRYATPYGLIRALKAGGLLAPVAVND
AAVRLLTIHGAKGLEAEAVLLLDTDTAPRNADSMGVLVDWPGEATEPRKFVFLVSEARPP
ACAQEALAAEQAARKREELNALYVAMTRARHTLAISSIEPHRATIDSWWQRLQGQVPPLD
APAPPDSLGEKADGAGQEGAAGFPAPAAEVFYLPELPAFEPPAPEPAAEGSVAEDPANAR
VGKAMHRLLEWGGRSSAEHVGAVAREFRLNPAQAQEACALAQCILKGEGAWAWSNEAVAW
HGDEIDLVYQGLPLRLDRLVRRKDAGFEGQWWVLDYKSAPEPELQPALITKMRIYRAAVQ
RIYPRATVKAAFLTGRGTVVELA
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcttacgaatgcaacggccagcccgtttccgccgacgctttttacgccatc
gcctgcgatccgcgccgcagcgtggccatcgaggcctgcgctggcgcgggcaagacctgg
atgctggtgtcgcgcatcgtgcgggcgctgctcgatggcgccaacgccccggaccctgcc
tccggcacgccgcgcgagccggtgcggccgcatgaaatcctggccatcaccttcaccaag
aaggccgccggcgaaatgcgcgagcggcttgacgagtggctgcaaaaattcacccatgcc
gacgacgagaccctgcgccaggaactcatcatgcgcggcgtttcaagccaaaagagcctg
cagtccaatgcggacatgcgccggcagctgtcaaatctataccgctccatgctcgccagc
gggcgggctgtgcagatccgcacctttcacagctggttcgccgccttgctgcgcagcgcg
cccgtggcggtgctgcaccggctgggcatgccggtgaattaccagttgctcgaagacgac
gcccccgcccgggcgctggtgtggcgccgcttttatgcggcgcttgccaaggacgcgctg
ctgaaggccgacttcgaggcgctggtgctgggccacggccgccaccaagccgacaaggcc
ctgcagtccgcgctggacaagcgcaccgagtttgtgctggctgacgaaaaaggcgtggtc
gatgcgtcggtgcagccttttgatgtgcagttcccggagttcgcggggctggccgcgccg
caggactgcctggcgccgggtggcccgcaccacggcctgctgctcgcggccgccaaggcg
ctgggccgcgccagtgcgcccagcttttccgccaagggcgtggaactggagcaagccctg
ggtgcgcaggaccggcccggcatcttcagcgcgctgctgaccgacaagggaacgccgcgc
aaattcggcgacaaaatcgtcggcatcgacaccgtgcggcaggcgcaggaactggtgctg
cgggtgcaggcggcctgccagcagcacgaggcgtggcttcaccagcagcgcatggcccgc
ctgagccgcctgctgatcgcgcagtacaaccagctcaagcgcgaacatggctgggtcgat
atgaacgatgtcgagcgggccgcgctggtcatgctcggcgacccggtgctcgccggctgg
gtgcaggagcggctggacgcgcgcatcaagcacctgatgatcgacgagttccaggacacc
aatccgctgcaatggcaggcgctgtcggcctggctgagcggctacggcggcgcgggcgcg
gcgcccagcgtgtttttggtcggcgaccccaagcagagcatttaccgctttcgccgcgcc
gagccgcaggtgttccgcgccgcgcaggccttcgtggtcgaggggctgggcggcgacttg
ctcagctgcgaccacacgcgccgcaacgcgctggccgtcatcgacacggtcaacgccgtc
atgggccatgcgcgcacggtggacggctacgacggctttcgcgagcacaccaccgattcg
gccaaagccggcgcgaccggctgcctgccggcgatttcccggcagcgggagggtgcagac
gcagacacgtcgccggaggcgggctggcgcgacagcctgagcacgccgcgcgaactgccc
gaggaaaccctgcgcacgctggaggcgcgccaggccgccgcctggatctcgcggcagctg
gccaccggcctgaaaccatcggacgtgatggtcctgtcgcgcaagcgggccggcctgctg
ccgctgcaggaagccttgcgcgcgctgcacattgcggcccagatcggcgagaaaaccgac
ctgatcgactgctgcgaagtattggatgtggtggcgctgctcgacgtgctggtgtcgccg
cagcacgatttgtcgttggcccgggcgctgcgctcgccgctgttcggcctgcttgatgcc
agcctggtgcaactggcgctgctgcaaaaggagttgaagctgccctggtctgagctgcta
caaaaaacagagctgctggcgcccgagctgcatgcgctggtgccctttttggctcgatgg
aagggctggctggacagcctgccgccgcatgacgccctgcaaaagatgtacgacgatggc
gatgtgctggcgcgctttgccgccgccgcgcccgccgcccagcgcccggcggtgttggcc
aacctgcgcgcgctgctgggcgtggcgctggggcgcgatggcgggcgctatgccacgccc
tacgggctgatccgggcgctcaaggctggcggcctgctggcgccggtggcggtcaacgat
gcggccgtgcgcctgctgacgatccacggcgccaagggcctggaggccgaggccgtgctg
ctgctggacaccgacaccgccccgcgcaacgccgacagcatgggcgtgctcgtggactgg
cccggcgaagccaccgagccgcgcaagtttgtctttctggtcagcgaagccagaccgccg
gcctgcgcgcaggaagcgctggccgccgagcaggccgcccgcaagcgcgaggaactcaac
gccctgtatgtcgccatgacgcgcgcccggcacacgctggcgatttcctccatcgagccg
caccgcgcgaccatcgacagctggtggcagcgcctgcaggggcaagtgccgccgctggat
gccccggccccgcctgactccctcggggagaaggccgacggtgccggccaggaaggcgcg
gctggcttcccagccccggccgccgaggttttttacctgcccgaacttcccgccttcgag
ccgcccgcccccgagccggccgccgaagggtcggtggcagaagacccggccaatgcccgc
gtcggcaaggccatgcaccgcctgctggagtggggcgggcgctcgtcggccgaacatgtg
ggcgcggtggcgcgcgagttccgcctcaacccggcgcaggcgcaggaggcttgcgcgctg
gcgcaatgcattttgaaaggcgagggcgcctgggcctggagcaacgaggccgtcgcctgg
cacggcgacgaaatcgacctggtgtaccagggcctgccgctgcgactggaccgcctggtg
cggcgcaaggacgccggcttcgagggccagtggtgggtgctcgactacaaatcggccccc
gagcccgaactgcagcccgcgctgatcaccaagatgcgcatctaccgcgccgccgtgcag
cgcatctacccgagagcgaccgtgaaggctgccttcctgaccgggcggggcacggtggtg
gaactggcctga
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