Polaromonas naphthalenivorans: Pnap_3086
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Entry
Pnap_3086 CDS
T00459
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pna
Polaromonas naphthalenivorans
Pathway
pna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pnap_3086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pna03019
]
Pnap_3086
03009 Ribosome biogenesis [BR:
pna03009
]
Pnap_3086
Enzymes [BR:
pna01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Pnap_3086
Messenger RNA biogenesis [BR:
pna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pnap_3086
Ribosome biogenesis [BR:
pna03009
]
Prokaryotic type
rRNA processing factors
Pnap_3086
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ABM38385
UniProt:
A1VRV7
LinkDB
All DBs
Position
3257099..3260329
Genome browser
AA seq
1076 aa
AA seq
DB search
MKRMLVNATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFTQGVSVSQARISDVIREGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDKLEYPGGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAGKGGKGAFLIYQESSLVIRAIRDYFNSDIGDILFDTDDVYEQAR
QFMAHVMPEHEHRVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQ
ILRIIQEESLKDSTASVLCQVPVDVASFLLNEKRSEISKIEMKQRINVLLVPNKTLETPN
YRLERLKHDDPRLDNIEASYKMADEAEDATTVTRRSQEKHNKQEPIIKGVLPDAPAPIAP
PKPVAVAPVAAKAPLPAPPVHVPAPAAAEKGLFGWIKNLFGMAEAPAPAPAPVLREVKKD
APQGDAPREGRPAEGRGERPERGERAERGGRDGRRSGGRVRGEGAAPEGRAEGRPDGRNA
ERRERNPEGRAEGGRPERQERPERQERPAGEPRAENRNEGRNDSSEAQPRNEGQAREGRG
ERNRPRADRPERAERPERGERIPRDAVEQDLALANQAAMAAAMGGETVAPRQERPAQDVG
REGERRQQGGRGEGRNDGRAEGRGEESSGEGRRERGERGGERGGERTGRRNERSSERADV
NAAPLAVAQADSFDAAHPAVVSALDEAGNPVAPVSSTDVQARRPEGQEESQERQPRERRS
RDRYGRDRRERGERSEQAVEGQETAEKSAVFEPNPPFAHEARAPLATELVAPAMPAAPVT
APATPAPVLAAAPLPAATAAPAPVPAPMANALPKVQAYDLPLQDLAQVAESSGLQWVNSD
AAKIAEAQAAIAAEVKPIQVPRERPAPVVSEEAPLVLVETRRDLGSLPLPFEKSAN
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctggtaaacgccacacaggccgaagaacgccgcctggcgattgttgac
ggacaaaaactcctcgactacgaaattgaaatcgaagggcgcgaacagcgcaagggcaac
atctacaaggccgtcgtcacccgcgtcgagccgtcgctggaagcctgctttgtcgattac
ggcgaagaccgccacggctttttgccgttcaaggaaatctccaagcaatacttcacgcag
ggcgtgtcggtcagccaggcgcgcatcagcgatgtgatccgcgaaggccaggaactgctg
gtccaggttgagaaggaagagcgcggcaacaagggcgcggcgctgaccacctttgtctcg
ctggccggccgctacgtggtcttgatgcccaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgaaggcgaagaccgcgccgagttgaaagaggccatggacaagctggaatacccc
ggcggcatgagcatcatcgcgcgcaccgccggcatcggccgcagcgcgcccgagctgcag
tgggacctgaactacctgctcaagctctggaccgcgattgacggcgccggcaagggcggc
aagggcgctttcctgatctaccaggaatcgagcctggtgatccgcgccatccgcgactat
ttcaacagcgacattggcgacattctgttcgataccgacgacgtgtacgagcaagcccgc
cagttcatggcgcatgtgatgcccgagcacgagcaccgcgtcaagcgctaccgcgacgac
gcgccgctgttctcgcgcttccagatcgagcaccagatcgagtcggcctatgcgcgcacc
gtgcagctgccttcgggcggcgccatcgtgattgaccacaccgaagcgctggtgtcggtg
gacgtgaactcggcgcgcgccatcaagggcggcgacatcgaggaaaccgccacccgcacc
aacctggaagctgccgacgaagtggcgcgccagatgcgcctgcgcgatctgggcggcctg
atcgtcatcgacttcatcgacatggaagagtcgcgcaaccgccgcgacgtggaaaaccgt
ttgcgcgacgcgctgcgccaagaccgcgcccgcgtgcagttcggcaccatcagcaagttc
ggcctgatggaaatgagccgccagcggctgcgcccggccctgtcagaaggcgcgtcgatt
ccgtgcccgcgctgcggcggttccggccacatccgcgacaccgaaagctcggcgctgcag
attttgcgcatcatccaggaagagtcgctgaaagacagcacggcttcggtgctgtgccag
gtgccggtcgatgtggcctcgttcctgctgaacgaaaagcgctcggaaatcagcaagatc
gaaatgaagcagcgcatcaacgtgctgctggtgcccaacaagacgctggaaacgccgaac
taccgactggagcgcctgaagcacgacgacccgcgcctggacaacatcgaggccagctac
aagatggccgacgaagcggaggacgccaccacggtgacgcgccgcagccaggaaaagcac
aacaagcaagaacccatcatcaagggcgttctgcccgacgcaccggccccgattgccccg
ccaaaaccagtggccgtggcgccggttgcggccaaggcaccgctgcctgcgccgccggtt
catgttcccgcgcctgctgcggcagaaaaagggctgttcggctggatcaagaacctgttc
ggcatggccgaagcaccagcgccagcgccggccccggttctcagggaagtgaaaaaggat
gcgccccagggcgatgcgccgcgtgaaggccgccctgccgaaggacgcggtgaacggccc
gagcgtggcgagcgtgcagagcgtggcggccgtgatggccgccgcagcggtggccgtgtc
cgtggcgaaggcgctgcgcccgaaggccgcgccgagggtcgtcccgatggccgcaacgct
gagcgccgtgagcgcaaccctgaaggacgcgccgaaggtggccgtcccgagcgccaggaa
cggccggaacgccaggagcgcccggccggcgagccccgcgccgaaaatcgcaatgaaggc
cgcaacgacagcagcgaagcccagccgcgcaatgaaggccaggcccgcgaaggccgcggt
gagcgcaaccgtccacgcgctgaccggcccgagcgcgccgagcgtccggaacgcggcgag
cgcattccgcgcgatgccgtagagcaggatctggccctggccaaccaggccgccatggct
gcggccatgggtggtgaaaccgttgccccgcgtcaggaacgtccggcacaggacgtgggc
cgtgagggtgagcgtcgccagcagggtggacgtggtgaaggccgcaatgatggccgcgct
gaagggcgtggcgaggaatcgtccggcgaaggccggcgcgagcgtggcgaacggggcggc
gagcgcggtggtgaacgcaccggccgccgcaatgaacgcagcagtgagcgcgcagacgtg
aatgccgcaccgttggcagtcgcgcaggccgacagctttgacgccgcccatccggccgtg
gtgtccgccctggacgaggccggcaatccggtcgcaccggtttcatcgaccgacgttcag
gctcgccgccctgaaggccaggaagaaagccaggagcgccagccgcgcgaacgccgcagc
cgtgaccgctatggccgcgaccgccgtgaacggggcgagcgcagcgagcaggccgtcgag
ggtcaggaaaccgctgaaaaatccgccgtttttgaaccaaatccgccttttgcgcacgaa
gcacgggcacctctagctactgaattggtagcgccagcgatgccggccgcgccggtgacg
gctccggccactccagcgccagtgctggcagccgcgccgctgcctgctgcaactgcagcg
cctgcacccgtgccggcaccgatggccaatgccctacccaaggtccaggcctacgacctg
cctttgcaggacctggcccaggttgccgagagttccggcctgcaatgggtcaattccgac
gccgccaagatcgctgaagcccaggcggccatcgcggccgaggtcaagccgatccaggtg
ccgcgcgagcgccctgccccggtggtgtcggaagaagcaccgctggtgctggtcgaaacc
aggcgcgacctgggcagcctgccgctgccgtttgaaaagtcagcgaactga
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