Polaromonas naphthalenivorans: Pnap_3202
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Entry
Pnap_3202 CDS
T00459
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pna
Polaromonas naphthalenivorans
Pathway
pna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pnap_3202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pna03019
]
Pnap_3202
Enzymes [BR:
pna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pnap_3202
Messenger RNA biogenesis [BR:
pna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pnap_3202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ABM38500
UniProt:
A1VS72
LinkDB
All DBs
Position
complement(3401389..3402852)
Genome browser
AA seq
487 aa
AA seq
DB search
MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFALP
LLQRMMKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKYTNLNSAVVFGGMDMK
PQTLELKKGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKQRITLLFSATFSPEIKRLAASFLQDPVTIEVARSNATAATVEQHFYSVGADDKRRAL
HQILKARDLKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALESFKSGEV
DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVAASDQRL
VTDIEKLIKTKIEIEPMEFEEDTPRISEQGRINDGRRMYREGEEGGAPAESRPPRERTTE
RRERREYTPHRQPAASRDPFFDRPYEPGIPAQSLPSWEASAKANPARNGVSANIKPKKKI
AALFKSS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgacctcttctttttccaatctttcgctggccgaaccgctggcacgcgccgtagccgaa
atgggctacgaaaccatgacccccatccaggaacaggccattccggtcgttctgcagggc
aaagacgtgatgggcgcagcccagaccggcaccggaaaaaccgctgcctttgcgctcccg
ctgctgcagcggatgatgaagcacgagaacgcttcgacctcgccagcgcgccatccggtg
cgggcgctggtgctgctgccaacccgtgaactggccgtgcaggtggccgagcaggtcaag
ctctacgccaaatacaccaacctgaacagcgcggtggtgtttggcggcatggacatgaag
ccgcagacgctggagcttaaaaaaggcgttgaggtgctggtcgccacgccgggccgcctg
ctcgatcacatcgaagccaagaacacggtgctgaaccaggtcgaatacgtggtgctcgac
gaagccgaccgcatgctcgacatcggctttctgcccgacctgcagcgcatcctgagctac
ctgcccaagcagcgcatcacgttgctgttctcggccaccttctcgcccgagatcaagcgc
ctggcggccagcttcctgcaagacccggtgacgatcgaagtggcgcgttccaacgccacc
gctgccacggtcgagcagcatttctacagcgtgggcgccgacgacaagcgccgcgcgctg
caccagatcctgaaggcgcgcgatctgaagcaggcgtttgtctttgtcaacagcaagctc
ggttgcgcgcgcctggcgcgctcgctggagcgcgaaggcctcaagaccaccgcgctgcac
ggcgacaagagccaggacgagcgcctgaaagcgctggaatcgttcaaaagcggcgaagtc
gatttgctggtctgcaccgacgtggcggcgcgcgggctggacatcaaggacgtgccagcg
gtgtttaacttcgacgttcccttcaacgctgaagactatgtccaccgcatcggccgcacc
ggccgcgccggcgcatcgggcctggccgtgagttttgtcgctgccagcgaccagcgcctg
gtgaccgacattgaaaagctcatcaagaccaagatcgagatcgaacccatggagttcgag
gaagacacgccgcgcatcagcgagcagggccgaatcaacgacggccggcgcatgtaccgc
gaaggcgaggagggtggcgcgccagcagagtcacggccaccccgcgaacgcacgaccgag
cgccgtgagcgccgcgaatacacgccgcatcgccagccggcagcctcgcgcgatccgttt
tttgaccggccttacgaacccggcatcccggcgcaatccctgccttcctgggaagcgtcg
gccaaggccaatcctgcgcgcaacggtgtgtcggccaacatcaagcccaagaagaaaatc
gccgcgctgttcaagtcttcctga
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