Polaromonas naphthalenivorans: Pnap_3639
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Entry
Pnap_3639 CDS
T00459
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pna
Polaromonas naphthalenivorans
Pathway
pna03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pna00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Pnap_3639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pna03021
]
Pnap_3639
03400 DNA repair and recombination proteins [BR:
pna03400
]
Pnap_3639
Enzymes [BR:
pna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Pnap_3639
Transcription machinery [BR:
pna03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Pnap_3639
DNA repair and recombination proteins [BR:
pna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Pnap_3639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ABM38935
UniProt:
A1VTF7
LinkDB
All DBs
Position
complement(3869514..3873728)
Genome browser
AA seq
1404 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDFDAKRKEYGDEYTAKM
GAEGIKDLLEGLDLDIEIDKLRNDLTGSEIKIKKNAKRLKLMEGFKKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFAQLEVRGIATTIKAAKKEVETGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNILFPANGEPSIVPSQDVVLGLYYTTRDRTNGKGEGLVFSDTGEVRRAFDAGEL
DLNARISVRLTEWSKDKETNEFVPSTKLWETTGGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQSGFRLATKAGISICIEDMLVPKEKTSIIAHAQKEV
KEIEQQYTSGLVTAGERYNKVVDIWGKSGDEVSKAMMAQLSKEKVIDRHGNLVEQDSFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLCDVVQDLVVTEDDCGTLDGSVMRAIVEGGEVIESLRDRVLG
RTIVEDVLHPENRSVLIKAGVMLDEDLIEELEAAGVDEVKVRTALTCETRFGLCAKCYGR
DLGRGGLINIGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGFN
APMRYVTNGKGDLVVIARSGEIIIHDEHGRERERHKVPYGATLTVKIDQTIKAGAILANW
DPLTRPIITEFAGKVQFENVEEGVTVAKQVDDVTGLSTLVVIDPKRRGATKVIRPQVKLI
DATGNEVKIPGTDHSVTIGFQIGALVQVRDGQDVGPGEVLARIPIEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTVSFGKETKGKVRLQITDPEGKVWEDLVPKEKNILVHEGQ
VVNKGESIVDGPADPQDILRLLGVAELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENVGDTSYIAGEQVERSALLDVNDALRADGKIPATFSNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHEARKAKDLMDDSERRA
IAESEAAELEASQAETSDENAAAE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattactcgacctgttcaagcagttcacgccggatgagcatttcgatgccatc
aagatcggcatggcctcgcctgagaaaattcgttcgtggtctttcggcgaagtcaaaaag
cccgagaccatcaactaccgcaccttcaagccagagcgcgacggtcttttttgcgccaag
atttttggccccatcaaggactacgaatgcctgtgcggcaagtacaagcgcctcaagcac
cgcggtgtcatctgcgaaaagtgcggcgttgaagtcacgcagaccaaggttcgccgcgaa
cgcatgggtcacatcgacctggccgctccctgcgcgcacatctggtttttgaagtcgttg
ccgtcgcgtctgggcctggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctacgtcgtgaccgaccccggcatgaccccgctgaagaaattcagcatcatg
tcggaagacgatttcgacgccaagcgcaaggaatacggcgacgagtacaccgccaagatg
ggcgccgaaggcatcaaggatctgctcgaaggcctggaccttgacattgaaatcgacaag
ctgcgcaacgacctgaccggctccgagatcaagatcaagaagaacgccaagcgcctgaag
ctgatggaaggattcaagaaatccggcatcaagcccgagtggatggttctggacgtgctg
ccggtgctgccgcctgacctgcgtcccctggttccgctggacggcggccgctttgcgacc
tccgacctgaacgatttgtaccgccgcgtcatcaaccgcaacagccgcctgcgccgtttg
ctggaattgaaagcgccggaaatcattgcccgcaacgaaaagcgcatgctccaggaagcc
gtggacagcttgctggacaacggccgccgtggcaaggccatgacgggcgcgaacaagcgc
gcgctcaagtcgctggccgacatgatcaagggcaagtcgggccgtttccgccagaatttg
ctgggcaagcgcgtcgattactcgggtcgttcggtgattaccgtgggcccgacgctcaag
ctgcaccagtgcggcctgcccaagctgatggcgctggaactgttcaagcccttcatcttc
gcgcagctcgaagtgcgtggcatcgccaccaccatcaaggcggccaagaaggaagtcgaa
accggcacgccggtggtctgggacattctggaagaggtcatcaaggagcatccggtgatg
ctcaaccgtgcgcctacgctgcaccgcttgggtatccaggcgttcgagccgatcctgatc
gaaggcaaggcgatccagctgcacccactggtctgctcggcgttcaatgccgactttgac
ggtgaccagatggccgttcacgtcccgctgtcggttgaagcgcagatggaagcgcgcacg
ctgatgctggcttcgaacaacattttgttcccggccaacggcgagccttccatcgttcct
tcccaggacgtggtgctgggtctgtactacacgacccgcgaccgcaccaacggcaagggc
gaaggcctggtgttctccgacaccggcgaagtccgccgcgcctttgacgcgggtgaactc
gacctgaacgcccgcatcagcgtgcgcctgaccgagtggagcaaggacaaggaaacgaac
gagttcgtgccatcgaccaagctgtgggaaaccaccggcgggcgcgcactgctgtccgaa
atcctgcccaagggcctgcctttttccaacatcaacaaggcgttgaagaaaaaggaaatc
tccaagctcatcaacgtgtctttccgcaaatgcggactcaaagagaccgtggtgtttgcc
gacaagctgctgcagtcgggtttccgcctggcgaccaaggccggcatctcgatctgcatc
gaagacatgctggtgcccaaggaaaagaccagcatcattgcgcacgcccagaaggaagtc
aaagagatcgagcagcagtacacctcgggtctggtgacggccggcgagcgctacaacaag
gtggtcgatatctggggcaagtcgggcgatgaggtctccaaggccatgatggcccagctg
tcgaaggaaaaagtcattgaccgccacggcaatctggtcgagcaggattcgttcaactca
atctacatgatggccgactcgggcgcacgcggttccgcagcgcagattcgccaggtcgcc
ggtatgcgcggcttgatggccaagcccgacggctcgatcatcgaaacgccgattaccgcg
aacttccgcgaaggcctgaacgttctggagtacttcatctccacccacggtgcccgtaag
ggtctggccgatacggcgctgaaaaccgccaactccggctacctgacgcgccgcctgtgc
gacgtggtgcaggatctggtcgtgaccgaagacgactgcggtacgctcgacggctccgtc
atgcgcgcgatcgtcgagggtggcgaggtcatcgaatcgctgcgcgaccgggttctcggc
cgcaccatcgtcgaagacgtgctgcaccccgaaaaccgctcggtgctgatcaaggccggc
gtcatgctggacgaagacctgatcgaggaactcgaagccgctggcgtcgatgaagtcaag
gtgcggaccgcactgacctgcgaaacccgctttggcctgtgcgccaagtgctatggccgt
gacttgggtcgcggcggcctgatcaacatcggcgaagcggtcggtatcatcgccgcccag
tcgattggcgagcccggcacgcagctgacgatgcggaccttccacatcggtggcgcggca
tcgcgggcggcaattgcctccagcgtcgaggccaagtccaacggcgtgatcggtttcaac
gcaccgatgcgctatgtgaccaacggcaaaggtgatctggtggtgattgcccgctccggc
gaaatcatcatccatgacgagcatggccgcgagcgcgagcgccacaaggtgccttacggc
gccacgctgacggtcaagatcgaccagaccatcaaggctggcgccatcttggccaactgg
gatccgctgacccgccccatcatcaccgaattcgccggcaaggtgcagttcgagaatgtg
gaagaaggcgtgacggtggccaagcaggtcgatgatgtgaccggcctctcgaccctggtg
gtgatcgatccgaagcgccgcggtgcgaccaaggtgatccgtccccaggtcaagctgatc
gacgccaccggcaacgaagtcaagattcccggcaccgatcactcggtgacgattggcttc
cagatcggcgcgctggtccaggtgcgtgacggccaggacgtgggccccggcgaagtgctg
gcccgcattccgattgaaggccagaagacccgcgacattaccggcggtctgccgcgcgtg
gccgagttgttcgaagcccgcacgccgaaggacaagggaacgctggccgagatgaccggc
accgtgtcgttcggcaaggagaccaagggcaaggttcgcctgcagatcaccgatcctgaa
ggcaaggtctgggaagacctggttccgaaggaaaagaacatcctggtgcatgaaggccag
gtggtgaacaagggtgagtcgattgtcgatggtccggccgatccgcaggacatcctgcgc
ctgctgggcgtggccgaactggcccgctacatcgtcgatgaagtgcaggacgtgtaccgt
ctgcagggcgtgaagatcaacgacaagcacatcgaagtgattgttcgccagatgctgcgt
cgcgtggtggtcgagaacgtcggcgacaccagctacatcgccggtgaacaggtcgagcgt
tcggcgctgctggatgtcaacgacgcgctgcgcgccgatggcaagattccggccaccttc
agcaacctgctgctcggtatcaccaaggcgtcgctctcgaccgattcgttcatctcggcg
gcttccttccaggaaaccacccgcgtgctcaccgaggctgccatcatgggcaagcgcgac
gagttgcgcggcctgaaggaaaacgtgatcgtcggccgcctgattcctgccggcaccggc
atggcctaccacgaagcccgcaaggccaaggatctgatggacgactccgaacgccgcgcc
atcgccgagtccgaagccgccgaactggaagcctcgcaggctgaaaccagcgatgaaaac
gccgccgccgagtaa
DBGET
integrated database retrieval system
