Polaromonas naphthalenivorans: Pnap_3710
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Entry
Pnap_3710 CDS
T00459
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
pna
Polaromonas naphthalenivorans
Pathway
pna02020
Two-component system
pna02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pna00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Pnap_3710
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Pnap_3710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pna03021
]
Pnap_3710
Transcription machinery [BR:
pna03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pnap_3710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
TPR_5
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ABM39006
UniProt:
A1VTM8
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All DBs
Position
3952112..3953677
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AA seq
521 aa
AA seq
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MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLEVADDSAPREEFG
LDQTDTPVSQDSREFDSATDSIAINTDTSSASSQKESETTAEASTEATLEESWEGDGSVE
SSPDDSEWGGDAPARKNNLDDSDAEASDLTGAHESLQDHLHRQALALRLSEVDRAALHFL
IESLNDDGYLEDSLASLAAGLAHGDLEQTEELEQCFAMALQLLQHMEPAGVGARTLAECL
NLQLLDCKDCEETRAAIAICKQPMELLAKRDFKRLASLCRFSEDAIKGAMAVIARLDPKP
GRRFANVERNLIVPDVIVVKSGRGFKVTLNSDVMPRLRVHDIYANALKQHSGRGSSGPGG
GQALQQRLQEARWFIKNIQQRFDTILRVSNAIVERQKNFFTHGELAMRPLVLREIADELG
LHESTISRVTTAKYMGTPFGTFELKYFFGSGLGTESGGNASSTAVRALIKQFVASESPRK
PLSDSQISEMLKEQGIECARRTVAKYREALRIAPTNLRKAL
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtctttccctccgcgtctcgcagcacctggcgctcacgccgcaactgcag
cagtcgatccggctgctgcagctttcgacgctggagttgagccaggaagtcgagcagatg
cttgatgaaaatccttttcttgaagtggccgacgactcggcgccgcgcgaagagtttggc
ctggaccagaccgacacgcccgtcagccaggacagccgcgaatttgattccgctacggat
tcgatagctataaacacagacacatcgagcgcaagcagccaaaaagagtctgaaaccacg
gcagaagcaagcaccgaagccacgctcgaagaaagctgggaaggcgacggctcggtcgag
tcctcgcccgatgacagcgaatggggcggcgatgcgccggcgcgcaagaacaacctggac
gacagcgacgccgaagcctcggacctgaccggcgcccatgagtcgctgcaggaccacctg
caccgccaggcgctggccctgcgcctgtccgaagtggaccgcgccgccctgcacttcctg
atcgagtcgctcaatgacgacggctacctcgaagacagtctggcctcgctcgcggccggc
ctggcgcatggcgacctggagcagaccgaggagctggagcagtgcttcgccatggcgctg
cagttgctgcagcacatggagccggccggcgtcggcgcgcgcaccctggccgaatgcctg
aacctgcaactgctcgattgcaaggattgcgaggaaacccgcgccgccattgccatctgc
aagcaaccgatggagctgctggccaagcgcgatttcaagcgcctggccagcctgtgccgg
ttctccgaggacgccatcaagggcgccatggccgtgattgcgcgcctggaccccaagccc
ggccggcgctttgccaatgtcgagcgcaacctgatcgttcccgacgtgatcgtcgtcaag
tccggccggggcttcaaggtcacgctcaacagcgacgtgatgccccggctgcgggtccac
gacatctacgccaacgccctcaagcagcacagcggccggggcagcagcggcccgggcggc
gggcaggcgctgcagcagcggctgcaggaagcgcgctggttcatcaagaacatccagcag
cgtttcgacaccatcctgcgggtcagcaacgccatcgtggagcggcagaaaaacttcttc
acccacggcgaactcgccatgcggccgctggtgctgcgcgagatcgccgacgagctgggc
ctgcacgaatcgaccatttcgcgcgtgaccacggccaagtacatgggcacgccgttcggc
accttcgagctgaagtatttcttcggctccgggctgggcaccgagagcggcggcaatgcg
tcgagcaccgccgtgcgcgcgctcatcaagcagttcgtcgcctccgaaagccccaggaag
ccgctcagcgacagccagatttccgagatgctcaaggagcagggcatcgaatgcgcgcgc
cgcacggtggccaaataccgcgaggccctgcgcatcgcaccgaccaatttgcgcaaggcg
ctgtga
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