Polaromonas naphthalenivorans: Pnap_4011
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Entry
Pnap_4011 CDS
T00459
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pna
Polaromonas naphthalenivorans
Brite
KEGG Orthology (KO) [BR:
pna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pna03016
]
Pnap_4011
Enzymes [BR:
pna01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pnap_4011
Transfer RNA biogenesis [BR:
pna03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Pnap_4011
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
S1
Motif
Other DBs
NCBI-ProteinID:
ABM39303
UniProt:
A1VUH5
LinkDB
All DBs
Position
4274678..4276150
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AA seq
490 aa
AA seq
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MNPINLHQIAVEAMRARGLLPAFAPQALQEAEDARQTSPERDGAIRDLRHLTWFSIDNDD
TRDLDQLSVAEPLSAGSTRLRVAVADVDTLVRPGGAVDGHAGANTTSVYTAAGVFPMLPE
VLSTDLTSLHEGQERLAVVVDMQVAADGTVPASSVYRAWVLNRAKLTYDGVSAWLDGTAP
APPQIASVPGLEDQLRLHDALAGQLRQWRQTRGALNVSTLSARPVFDGNGQLVDLRADNK
NRAKDLIADLMIAANGATARYLADQGFPSLRRLLQAPRRWDRIALLASSHGVQLPATPDP
LALDRFLSARRLADPAGFADLSLAVVKLLGSGEYAAAPAVANGAAAATGLGHFGLAVNDY
AHSTAPNRRFPDLVTQRLLKAAIAGEAPPYSAGQLAEIAQHCTLQEDNASKVERQVLKAA
GAWLLHGRIGEVFDAIVTGAAPKGTFVRIGSPLLEGRVVRGFEGLDVGDAARVRLLAVDA
EKSYIDFERA
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccatcaacctccaccagatcgccgtcgaagccatgcgcgcccggggcctgctg
cccgcctttgcgccgcaggccttgcaagaggccgaggacgcgcgccagaccagccctgag
cgcgacggcgccatccgcgacctgcgccacctgacctggttttccatcgacaacgacgac
acgcgcgacctggaccagttgagcgtggccgagccgctgtccgccggcagcacgcgcctg
cgggtggcggtggccgacgtcgacaccctggtgcggcccggtggcgcggtggatggccat
gcgggcgccaacaccacctcggtgtacacggcggccggagtgttcccgatgctgcccgaa
gtgctgtccaccgacctcacctcgctgcacgagggccaggagcggctggcggtggtggtc
gacatgcaggtcgcggccgacggcacggtgccggcctcaagcgtctatcgcgcatgggtg
ctcaaccgcgccaagctcacctacgacggcgtctcggcatggctcgacggcacagcgcca
gcgccgccgcagatcgccagcgtgccggggctggaggaccagcttcgcctgcacgacgcg
ctggccggtcagttgcggcaatggcgccagacgcgcggcgcgctcaatgtcagcacgctg
tccgcgcgcccggtgttcgatggaaacgggcaactggtggacctgcgcgccgacaacaag
aaccgcgccaaggacctgatcgccgacctgatgatcgcggccaacggcgcgacggcgcgg
tatctggcggaccagggtttcccgtcgctgcggcggctgctgcaggcgccgcgccgctgg
gaccgcatcgccctgctggcctctagccacggcgtgcagctgccggcaacgcccgatccg
ctggcgctggaccgcttcctgagcgcgcgccggctggccgacccggccggtttcgccgac
ctgtcgctggcggtggtgaagctgctgggctcgggcgagtacgcggccgcgcccgctgtg
gcgaacggtgctgcggctgcaacgggattggggcacttcgggctcgcggtgaacgactac
gcgcattccaccgcgcccaaccggcgctttcccgacctggtgacccagcgcctgctgaag
gccgccatcgcgggcgaggcgccgccctattcggccgggcagctggccgaaatcgcccag
cattgcacgctgcaggaggacaacgccagcaaggtcgagcgccaggtgctcaaggcggcg
ggcgcctggctgctgcacgggcgcatcggcgaggtcttcgacgccatcgtcaccggcgcg
gcgcccaaggggacgttcgtgcgcatcggcagcccgctgctcgaaggccgggtggtgcgc
ggcttcgaggggctggacgtgggcgatgcggcgcgcgtgcggctgctggcggtggatgcg
gaaaaaagctatatcgacttcgagcgcgcctga
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