KEGG   Polaromonas naphthalenivorans: Pnap_4119
Entry
Pnap_4119         CDS       T00459                                 
Name
(GenBank) DNA gyrase subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
pna  Polaromonas naphthalenivorans
Brite
KEGG Orthology (KO) [BR:pna00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pna03032]
    Pnap_4119
   03400 DNA repair and recombination proteins [BR:pna03400]
    Pnap_4119
Enzymes [BR:pna01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     Pnap_4119
DNA replication proteins [BR:pna03032]
 Prokaryotic type
  DNA Topoisomerases
   Pnap_4119
DNA repair and recombination proteins [BR:pna03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Pnap_4119
SSDB
Motif
Pfam: DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3
Other DBs
NCBI-ProteinID: ABM39409
UniProt: A1VUT1
LinkDB
Position
4405728..4408352
AA seq 874 aa
MTEENKLNEADQVHVSDGLAGEGSSNFQPKIDTNQAGASEAYGEGSIQILEGLEAVRKRP
GMYIGDTSDGTGLHHLVFEVVDNSIDESLAGHCDDILVTIHTDNSVSVVDNGRGIPTGVK
MDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTIRRDGK
VHVMEFSRGFVQNRIVEMANGVEVSPMKVMGPTDKRGTEVHFLPDTDIFKENNDFHYEIL
SKRLRELSFLNNGVRIRLKDERSGKEDDFSGTGGVKGFVEFINKGKTVLHPNVFNAMGDR
QSDQGTNIGVEVAMQWNSGYSEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIDDTEL
AKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEDIVSRLLNDYLQ
ERPNDAKIIVGKIIEAARAREAARKARDMTRRKGVLDGMGLPGKLADCQEKDPAMCEIYL
VEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARYEKLLTSNEILILITALGTGIGKGG
GVGGTPGADDFNVAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGHIYIAQP
PLYKVKAGKEEQYLKDTAALDGFLLRIALKDASVQTGADDSSVLTGDALGELARKHQQAE
SVISRLMGFMDAEALRAIADGVSLNLDTVADAEVSAVALQAKLRELNTTGAPAEVAGEFD
VRSDKPILRISRRHHGNVKSSVLTQDFVVGADYAVLAEAASTFHGLIGDGAKVMRGEGER
RKEEKISDFRQAMRWLIGQAEHGTARQRYKGLGEMNPAQLWETTLDPKVRRLLKVQIDDA
IEADRVFTMLMGDEVEPRREFIEQNALRAGNIDI
NT seq 2625 nt   +upstreamnt  +downstreamnt
atgactgaagaaaacaaactgaacgaagccgaccaggtacatgtgtccgacgggttggcg
ggcgaaggaagctccaatttccagcccaaaatcgacaccaaccaggcgggcgcctctgaa
gcctacggcgaaggttcgatccagattctggaaggcctggaagcagtgcgcaagcgcccc
ggcatgtacatcggcgacacctcggacggcaccgggctgcatcacctggtgttcgaggtg
gtcgataactccatcgacgagtcgctggccggccactgcgatgacatcctggtcaccatc
cacaccgacaactcggtcagcgtggtcgataacggacgcggtattccgaccggcgtgaag
atggacgacaagcacgagccgaaacgctcggcggccgaaattgccctgaccgaactgcat
gccggcggcaagttcaaccagaacagctacaaggtgtcgggcggcctgcacggcgtcggc
gtgagctgcgtgaatgccttgtcaaaaatgctgcggctgacgattcgccgcgatggcaag
gtgcatgtcatggagttttcccggggctttgtgcaaaaccgcatcgtcgagatggccaat
ggcgtcgaggtgtcgccgatgaaggtgatggggccgaccgacaagcgcggcaccgaagtc
cacttcttgcccgacaccgacatcttcaaggaaaacaacgatttccattacgaaatcctc
agcaagcgcctgcgcgaactgagctttttgaacaacggcgtacgcattcgcctgaaggac
gaacgcagcggcaaggaggatgacttttccggcaccggcggcgtcaagggctttgtggaa
ttcatcaacaagggcaagacggtcttgcaccccaacgtgttcaatgccatgggcgaccgc
cagagcgaccagggcaccaacatcggcgtcgaagtggcgatgcagtggaacagcggctac
agcgagcaggtgctgtgtttcaccaacaacattccccagcgcgacggcggcacccacctg
accggcctgcgcgcggccatgacgcgggtcatcaacaaatacatcgacgacaccgagctg
gccaagaaagccaaggtcgaggttaccggcgacgacatgcgcgaaggcctgtgctgcgtg
ctgagcgtgaaggtgcccgagcccaagttttcgagccagaccaaggacaagctggtgtcc
agcgaagtgcgcggcccggtcgaggacatcgtcagccgcctgctgaacgactacctgcag
gaacgcccgaacgacgccaagatcatcgtcggcaagatcatcgaagccgcccgagccaga
gaagccgcccgcaaggcgcgcgacatgacgcgccgcaagggcgtgctcgacggcatgggc
ctgcccggcaagctggccgactgccaggaaaaagacccggcgatgtgcgagatttacctg
gtcgagggcgactccgccggcggctcggccaagcagggtcgtgaccgtaagttccaggca
attttgccgctcaagggcaagatcctgaacgtcgaaaaagcccgctacgaaaagctgctg
accagcaacgaaatcctgattttgatcaccgctttgggcaccggcatcggcaagggcggc
ggcgtgggcggcacgcctggcgccgacgacttcaacgtcgccaagctgcgctaccaccgc
atcatcatcatgaccgatgccgacgtggacggcgcgcacatccgcacgctgctgctgacc
tttttctaccgccagatgcccgagctgatcgagcgtggtcacatctacatcgcccagccg
ccgctgtacaaggtcaaggccggcaaggaagagcagtacctgaaggacacggccgcactc
gacggcttcctgctgcggattgcgctgaaggatgcgtcagtgcaaaccggcgccgacgac
agctccgtgctgaccggcgatgcgctgggcgaactggcgcgcaagcaccagcaggccgag
tcggtgatcagccgcctgatggggttcatggatgccgaggcgctgcgcgcgattgccgat
ggcgtgtcgctcaacctggacacggtggccgacgccgaggtgtccgccgtggcgctgcag
gccaagctgcgcgagctgaacacgacaggcgcaccggccgaagtggccggcgaattcgac
gtgcgcagcgacaagccgattctgcgcatcagccgccgccaccacggcaatgtcaagagc
agcgtgctgacgcaggacttcgtggtcggtgccgactatgccgtcctggccgaagcggcc
agcactttccacggcctgatcggcgacggcgccaaggtcatgcgcggcgaaggcgagcgg
cgcaaggaagaaaagatcagcgacttccgtcaggccatgcgctggctgatcggccaggct
gaacacggcacggcacgccagcgctacaaggggctgggcgagatgaacccggcccagctc
tgggaaaccacgctcgaccccaaggttcgccgcctgctcaaggtgcagatcgacgacgcc
atcgaagccgaccgggtgttcaccatgctgatgggcgacgaggtcgagccgcgccgcgaa
ttcattgagcaaaatgcgctgcgggcggggaatatcgacatctga

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