Pieris napi (green-veined white): 125050602
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Entry
125050602 CDS
T08706
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pnap
Pieris napi (green-veined white)
Pathway
pnap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125050602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnap03019
]
125050602
03041 Spliceosome [BR:
pnap03041
]
125050602
03009 Ribosome biogenesis [BR:
pnap03009
]
125050602
03016 Transfer RNA biogenesis [BR:
pnap03016
]
125050602
Enzymes [BR:
pnap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125050602
Messenger RNA biogenesis [BR:
pnap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125050602
Spliceosome [BR:
pnap03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125050602
Complex C
U4/U6.U5 tri-SnRNP related factors
125050602
Ribosome biogenesis [BR:
pnap03009
]
Eukaryotic type
Pre-60S particles
Helicases
125050602
Transfer RNA biogenesis [BR:
pnap03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125050602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
Motif
Other DBs
NCBI-GeneID:
125050602
NCBI-ProteinID:
XP_047506504
LinkDB
All DBs
Position
1:5938453..5956370
Genome browser
AA seq
1031 aa
AA seq
DB search
MSGLNSLFDCFEEPSSNEICLQVPNVDNVEETSKDEKTQNKRAHEQVEYADTEVQPEDNK
KLKPDEDESDLLADLNLDLANSRIVIHTLETHEGCTHEVAVPPNHEYLPLVPLSGTPVKQ
YSFILDPFQKEAIMCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKKKQRVIYTTPIKALS
NQKYREFSEEFIDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIH
YMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTP
LQHYIFPAGGDGIHLVVDEKGQFKEGNFTTAMTVLSNAGDAGKGDQRGRRGGFKGGNNTN
IFNIVKMIMERNFAPVIIFSFSKKDCELYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLSE
EDRKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPA
RTVVFTNCQKFDGKDFRFITSGEYIQMSGRAGRRGLDDKGIVILMIDQKVAPNTVKSMVQ
GKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDIIEKVKTKQKEYD
ALGIEQEHSIASYCALRSQLDLLGAQFRSFITRPEYLKPFLQPGRLVKIKTEKHEYDWGI
IVNFRHKTKGKKGKHENPLTAETVILVDTLLHVKKSSGDDPDTNVPCPPGETGDVEVVPV
LHTLINQISSLRVYYPKDLRPADSRKSVLKTINEVKKRFPDGPPLLNPIKDMKIDEPVFK
DCVDKIKVFEERLFAHPLHKDKNRGALTAAYEKKQEIYDELKQAKGELKKAKSILQMDDL
KKRKRVLRRMGYCTMSDVIELKGRIACELSSADELLLTELIFNGVFNSLTPEQCAALVSC
FVCDENSTQASATGEELKGVLRQLQEYARRIAKISIEAHMDLVEDEYVGKFKCTIMDVVL
AWAKGANFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAVNIGNVDLENKFTEAIKMLK
RDIVFAASLYM
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcttaaactctttatttgactgtttcgaagagccatcttctaatgaaatatgc
ttacaagttcctaatgttgacaatgtggaggagacatcaaaagatgaaaaaactcaaaac
aagagagctcacgaacaagtggaatatgctgatacagaagttcaaccagaggataataag
aaacttaaacctgatgaagatgagagtgatttattagcggatttgaacttagatttagct
aattctcgaatagtcattcacacccttgaaacacatgaaggttgcactcatgaagtagca
gtgcctccaaatcatgaatatttacccctggttccattatctggtactccagtaaaacag
tatagtttcatattggatccatttcaaaaggaagctattatgtgcattgacaatctgcag
tcggtacttgtttctgcacacacatcagctggaaaaacagttgttgctgagtatgccata
gcattatccctgaagaaaaaacaaagagttatatacacaacacccataaaagccttatca
aatcagaaatacagagagttttcagaggaatttattgatgttggtttaataactggagat
gttactattaatcctactgcatcctgtcttattatgactactgagattttgcggaatatg
ttatatagaggatcagaaatcatgcgtgaggttggttgggttgtgtttgatgaaattcac
tacatgagggataaagaaagaggtgttgtatgggaagaaaccttaattcttctccccgac
aatgttcactacgtgtttctatctgctactatccccaacgcacgtcaattcgctgaatgg
gtgtgtcgtctccattcgcaaccctgtcacgtggtttacaccgaatatcggcccacccct
ctacaacattatatattcccagctggtggtgacggaatccatctagttgttgatgagaag
ggtcaattcaaagaaggcaatttcaccacagccatgacagttctaagtaacgccggagat
gcgggtaagggtgaccagcgcggacgtcgcggaggtttcaaaggaggaaataatacgaat
atttttaatatcgtcaagatgataatggagaggaactttgccccagtaatcatattcagc
ttcagtaagaaggattgtgagctgtatgcaatgcaaatggcgaaattggactttaatact
attgaagaaaagaaactggttgatgaggtattcaataatgcaatggatgtgttatctgag
gaggataggaaactgccccaagttgaaaatgtcattccgttactgagacgcggtattgga
atacatcacggtggtcttctgcccatacttaaggagaccattgagattttattcggatta
ggacttattaaggcactatttgcgacagagaccttcgctatgggcctcaacatgccggcg
aggaccgtggttttcaccaattgccagaaattcgatggcaaagatttcagatttataaca
tcaggcgagtatatccaaatgtctggacgtgctgggcgtcgaggattggacgacaagggg
attgttattttgatgattgaccaaaaagtggctcctaacacagtgaagtccatggttcag
ggtaaagcggatcctattaattcggccttccacctcacttataatatggtgttaaatcta
ttgcgagtggaagaaataaatcccgaatatatgttggagagaagtttcttccagtttcaa
aatcaggccgctattccagatattatagagaaggttaaaacaaaacagaaagaatatgat
gcgttaggcatagagcaggaacactctatagcgtcgtattgtgctcttcgttcacaatta
gaccttttgggagctcaattccgctcttttattacacgtcctgaataccttaagccattc
ctacagcccggacgacttgttaagataaaaaccgaaaaacacgaatatgactggggaatt
atagtgaattttaggcacaaaacaaaagggaaaaaggggaaacacgagaaccccttaacc
gctgaaacagtcatattagtagatacgctgttacacgtgaagaaatcaagtggagacgac
ccggacactaatgtaccatgtccacctggagagacgggagatgttgaagtcgttccagtg
ctacacactttgattaatcaaataagctcgctgagagtctattatccgaaagatttaagg
ccagcagatagtcgcaaatccgtactgaagacaattaatgaagtgaaaaaacgtttccct
gacggaccacctttgttaaatccaataaaggatatgaaaattgacgaaccggtgttcaag
gactgtgtggataaaatcaaggtgtttgaagagaggttatttgctcatcctttacacaaa
gacaagaatcgaggagcgctaacagccgcctatgaaaagaaacaagaaatatatgacgaa
ctaaaacaagcgaaaggtgaacttaaaaaagcgaaaagtattttacaaatggacgattta
aagaaacgtaaacgtgttcttagacgaatgggatattgtactatgtctgatgttatcgaa
ctcaaaggacgaattgcctgcgagctcagtagtgctgacgagctgttactgacagagtta
atatttaacggagttttcaactcattgacaccagagcaatgtgcagctttagtaagctgt
tttgtttgtgatgagaattctacgcaggcttctgccactggcgaggagttgaaaggtgtt
ttaagacaattacaggaatatgctagaagaattgcaaagatatcaatagaagcccacatg
gatttagtagaagacgagtatgtgggcaaattcaaatgtacgattatggatgttgtactc
gcctgggccaaaggcgcgaatttcctgcaaatatgcaagatgacagatgtttttgaaggt
tcaataatccggtgcatgcgtcgcctagaagaggtattacgtcagttatgccaagcggcc
gtaaatattggtaacgttgacttggagaacaaattcactgaagccatcaaaatgctcaaa
cgagacatcgttttcgccgccagtctttacatgtag
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