Pieris napi (green-veined white): 125052813
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Entry
125052813 CDS
T08706
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pnap
Pieris napi (green-veined white)
Brite
KEGG Orthology (KO) [BR:
pnap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pnap03016
]
125052813
Enzymes [BR:
pnap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
125052813
Transfer RNA biogenesis [BR:
pnap03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125052813
Prokaryotic type
tRNA splicing ligases
125052813
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6471
ScdA_N
Motif
Other DBs
NCBI-GeneID:
125052813
NCBI-ProteinID:
XP_047509778
LinkDB
All DBs
Position
10:complement(10139460..10142687)
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AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLEKINAHCWRIKKGFQPNMNVEGVFYVNNTLEKLMLDELRNSCRPGMT
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMSNPDSIVSPGGVGFD
INCGVRLLRTNLHEKDVLPIKEQLTQSLFDHIPVGVGSKGIIPMNARDMEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYTEIQVVDEIYD
KFAAGKMGLERLGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDQIDVNDRQLACARIN
SKEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFKMAPDDLDMHVIYDVSHNIAKVE
EHIVDGKLRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGSMGTCSYVLTGTHQGM
TETFGSTCHGAGRALSRAKSRRNIDYKEVLNKLETMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKTVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggttcgccaatacaacgaggagctcaaatatctggaaaagatcaacgcgcattgt
tggagaattaaaaaaggctttcaacccaatatgaatgttgagggcgtgttttatgttaat
aacactttagagaaacttatgttagatgaactacgcaactcctgtagacctggaatgaca
ggaggatttttacctggcgtaaaacaaatagccaacgtagctgcattgccgggtattgtt
ggtcgatctgttggtttaccagatgttcattctggatatggttttgctattggaaatatg
gcagcttttgatatgtctaatcctgactctattgtttccccgggaggtgtaggatttgac
attaattgtggagtcaggcttttaagaacaaatctacatgagaaagatgttcttcctatt
aaggagcaattgacccaaagtctatttgatcatattcctgttggagtaggttcaaaagga
atcattcctatgaatgccagagatatggaagaagcgttggaaatgggcatggattggtcg
ctaagggagggttacgtatgggctgaggataaggagcattgtgaagaatatggaagaatg
ttaaatgctgatccttcaaaagtaagtcttagagcaaagaaaagaggtttgccacaactt
gggactttaggtgctggcaatcattatactgaaattcaagttgttgatgaaatatatgat
aaatttgctgctggtaaaatgggacttgagagattaggtcaagtatgtgttatgatacat
tcaggaagtagaggttttgggcaccaagtagcaactgatgctttggtgcaaatggagaaa
gcaatgaaaagagatcagattgatgtaaatgatcgacaactagcctgtgcaagaattaat
tccaaagaaggtcaggattacctaaaagctatggcagcagcagctaattttgcttgggtc
aatcgcagttcaatgacttttctaacaagacaagcttttgccaagcaattcaaaatggct
cctgatgatttagacatgcatgttatttatgatgtttctcacaatattgctaaagtagaa
gaacatatagtagatggtaaattaaggacccttttagttcatagaaagggttctactagg
gcttttccacctcaccatcctcttatacctgtagattatcaattaactggccagcctgta
ttaataggtggttctatgggtacttgtagctatgtcctcacaggtactcatcaaggcatg
actgaaacatttggttccacttgccatggagcgggaagagctctttctcgagcaaagtcg
aggcgtaacatagattataaggaagtactgaacaaactagaaaccatgggaatatcaatt
agagttgcatcgccaaaattagtaatggaagaagctccagaatcatataaaaatgttaca
gatgttgtcaacacttgccatgcagctgggataagtaaaaagactgtaaaattgcgtcct
attgctgtaataaaggggtag
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