Pieris napi (green-veined white): 125057498
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Entry
125057498 CDS
T08706
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pnap
Pieris napi (green-veined white)
Pathway
pnap03022
Basal transcription factors
pnap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pnap00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125057498
09124 Replication and repair
03420 Nucleotide excision repair
125057498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnap03021
]
125057498
03400 DNA repair and recombination proteins [BR:
pnap03400
]
125057498
Transcription machinery [BR:
pnap03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125057498
DNA repair and recombination proteins [BR:
pnap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125057498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
125057498
NCBI-ProteinID:
XP_047517177
LinkDB
All DBs
Position
16:complement(10321540..10332961)
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AA seq
649 aa
AA seq
DB search
MFPVSTFFNVDDHSLMTEARFLAPEISPRFHRGHVESETRFNYCTLSSXLXKLFTEHIHT
MSRSKVYTQNGAXRNEIALRSTSCLCTTDGRRLLHPPSADENECGELRRESFVCATCPYI
DYCRFKSQFSIHYSIVSNCKIKVFKSLSQNNHQHFLYKNTLNILNVTPTQIPLKMSESSK
SKSSNLNATPSLQCKDLHEYLKSRSSQFLETLYNYPTICLAVYRELPELARHFIIRLLFV
EQPVPQAVVASWVTQTHAKEQSKASEALTELSVWHEAPIPGGLPGWLLSQSFKKNLKIAL
LGGGRPWSMSQTLEPDGKARDVAFLDAYALERWECVLHYMVGSQQTEGISADAVRILLHA
GLMTRDAEDGSAVITKAGFQFLLLSTAKQVWLFLQHYLHTAEKRNLSSAECLAYLYQLSF
STLGKDYSTEGMSNNMLMFLQHLREFGLVYQRKRKAGRFYPTRLALNITCVRDGIAPLEA
KRSQGYIVVESNYRLYGYTQSTLQVALLGLFTELMYRFPNLVVGVITRESVRQAFRGGIS
AQQIIKFLEQHSHPQMLCAESGGIKTSSLLPPTVVDQIRLWESERNRFTYTEGVVYNQFL
SQADFVVLRDYARAQGVLSWQNERTRTMVVTRPGHDDVKKFWKRYSKSS
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgtttcctgtgtcaactttttttaatgtcgacgatcactcgctcatgacggaggcgcgg
tttctagcgcccgagatatcgcctcgattccaccgtgggcatgtcgaaagtgaaacacga
ttcaattattgtacactgagttcgtagttannaaaattattcacggagcacatacacaca
atgtcccgttcgaaagtttacacacaaaatggtgcttagcggaacgaaatcgcactgcgc
tcaacgagttgtctgtgcacgactgatggaaggcgtctactgcatccgccatctgccgac
gagaatgaatgcggtgaactcagacgcgagtcgtttgtgtgcgcaacctgtccgtatata
gattattgcagatttaaatcacaattcagtattcactatagtatagtgtcaaattgcaag
ataaaagtgtttaaaagtttatctcaaaataatcatcaacattttttatataaaaataca
ttgaatattttgaatgtaactccaacacaaattcctttaaaaatgtctgaatcatcaaaa
tcgaaatcttctaacttaaatgctacacctagcttacaatgtaaagatctacacgagtat
cttaaaagtcggtcttctcagtttttggagactctctacaattaccctacaatttgttta
gcagtgtatagagaattaccagaactggctcgacactttataattcgccttctttttgtc
gaacagccagtcccacaagcagttgtagcatcatgggtcacacaaacacatgctaaggaa
caaagcaaagcttctgaggcattaacagaactatcagtatggcatgaggcacctatacct
ggaggcttaccgggatggttgttatcacagtcatttaagaaaaatttaaaaattgctctt
ttgggtggtggccgaccatggagtatgtctcaaaccttggaaccagatggcaaagcaagg
gatgtagcattcttagatgcatatgcacttgagcgatgggaatgtgttcttcattacatg
gttggcagtcagcaaacagaaggaattagtgctgatgctgtaaggatattgcttcatgct
ggactcatgactagagatgcggaggatggctcagcggtaataactaaagccggctttcag
ttccttttgctcagtacggctaaacaggtatggttattccttcaacattatctacacact
gcggagaagaggaatctgagttcagcggaatgtttagcttatttatatcaactcagcttt
agtacacttggaaaggactacagtacagaaggcatgagcaacaatatgctgatgttttta
cagcatttgagggagtttggactcgtctatcagagaaagcgcaaagcgggtcgcttttac
cccacgcgtctggcgctaaatataacctgtgttcgagatggtatagcgccgttggaagcc
aaaaggtcgcaagggtatatagtcgttgagagcaattatcgcctctacgggtatacgcag
agcacattgcaagtcgctcttttgggactcttcaccgagttaatgtataggttcccgaac
ttagtggtcggagtgataactcgtgaatcagtgcgtcaggcgtttcgaggtggaatctca
gctcaacagatcatcaagtttctggagcagcattcacatccacagatgctgtgcgctgaa
tctggtggtataaagacatcatcacttctcccgccgacagtcgtggatcagatcagactt
tgggagagtgagaggaaccgcttcacgtacaccgagggagtggtctacaaccagttccta
tcacaggctgacttcgtagtattacgagattatgcgcgtgcgcagggcgtactaagttgg
cagaacgagcgcacacgtactatggttgtgacaagaccgggacacgatgacgtcaagaag
ttctggaaacggtactccaagtcctcttag
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