Pieris napi (green-veined white): 125062562
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Entry
125062562 CDS
T08706
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pnap
Pieris napi (green-veined white)
Pathway
pnap03020
RNA polymerase
pnap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pnap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125062562
09124 Replication and repair
03420 Nucleotide excision repair
125062562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnap03021
]
125062562
03400 DNA repair and recombination proteins [BR:
pnap03400
]
125062562
Enzymes [BR:
pnap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125062562
Transcription machinery [BR:
pnap03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125062562
DNA repair and recombination proteins [BR:
pnap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125062562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
125062562
NCBI-ProteinID:
XP_047524560
EnsemblRapid:
ENSPNPG00015040451
LinkDB
All DBs
Position
1:complement(8352858..8360556)
Genome browser
AA seq
1902 aa
AA seq
DB search
MATTTDSKAPVRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKKGSGHGGCGHYQPS
IRRQGLDLTAEWKHANEDTQEKKIIITAERVWEILKQITDEESFILGMDPKFARPDWMIV
TVLPVPPLSVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQTGAAAHVLADNIRML
QFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPTPLWTGKQIFTLIIPGNVNMIRTHSTHP
DEEDDGPYKWISPGDTKVIVDHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIKNTIVKAKDDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTIK
LSNKAFEKKFKFDPTNERYLKRIFNEDIIKELTESGYVIGDLESEWDQLGKDRSVLREIF
PSGESKVVLPCNFKRMIWNVQKIFHINKRSTTDLSPIKVIQSVRDLLKKCVIVAGEDRLS
KQANENATLLFQCLVRSTLCAKLVSEDYRLSTEAFEWLIGEIETRFQQAQANPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQEFVNVYYEMPDFDPTKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIVITEQGEFK
AIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGLGVGGGMYFGVGTPSMT
PLMTPWSNQNTPGYGSSVWSPGPVGSSMTPGPSFSPSGASDASGMSPSYSSAWSPQPGSP
GSPGAPLSPYASPAGVSPSYSPTSPVYAAPSPSLIPTSPHYSPTSPSYSPTSPNYSPTSP
IYTPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSP
TSSNYSPTSPSYSPSPAYSPTSPGYSPTSPRYSPNSPVYTSGAHSYSSSSPNYTPTSPAY
SPTNHSYSPTSPNNYSPTSRNYSPSSPKYFSTSPKYSPTSPSVSGGSPRYSPNSLQYSPT
SPQYSPSPAYSPSSPQHSGSSNYSPSSPNYSPSSPNYSSPGYSPSSSKYSPTSPTFTPTS
NNYSPSSPAYSPASGGPSTYSPTSPTSPTYTPTSPNYEEDDD
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
atggcgactacgactgattcgaaggcgcctgtgcgccaagtaaaacgagtgcagtttggt
atattatccccagatgaaattcgtcgtatgtctgtcacggaagggggcatacgcttccca
gaaacaatggagggtggacgaccaaagcttggaggtcttatggacccacgacaaggggtg
atcgatagaacatctagatgtcagacttgtgcgggaaatatgactgagtgtcctggtcat
tttgggcatatagatttggctaagccagtattccacataggattcatcacaaaaaccata
aaaattttgagatgtgtctgtttttactgttccaaacttcttgtcagtccgacaaatccc
aaaataaaagaagtagtaatgaaatctaaagggcaaccacgtaaacgattgacttatgtt
tatgacttatgtaaaggaaaaaatatttgtgaaggtggtgaagatatggatattggcaaa
gaaggtgaagagggtaaaaaaggctctggtcatggtggttgtggtcactatcagccttca
atcagacggcaaggtctagacctcacagctgaatggaaacatgcaaatgaagatactcaa
gagaaaaaaataattataactgcagaacgggtctgggaaatattgaaacaaataacagat
gaagagtcctttatactgggtatggatccaaagtttgctagacccgattggatgatagta
acagttttacctgtaccaccattgtctgttagacctgcggttgtcatgtttgggtctgcc
aaaaatcaagatgatttgacccataaactggctgatattattaaagcaaataatgaactg
atgaggaatgaacaaactggcgctgctgctcatgttttagctgacaatattaggatgtta
cagttccatgttgccacatttgtagataatgatatgcctggcatgccaaaagctatgcag
aaatctggaaagccacttaaagccattaaagctcgacttaaaggaaaagaggggagaatc
agaggaaatcttatggggaagcgtgtagatttttcagccagaactgtcattacaccggat
cccaatcttcgcattgatcaagtaggggttccaaggtctatagctcaaaatttgacattc
ccggaactagtgacgccatttaacattgataggatgcaggaattagtaaggagaggtaac
gcgcaatatcctggtgcaaaatatatagttcgtgacaatggagaacgtattgatttgagg
ttccatcccaaaccttctgaccttcatttacagtatggttataaagttgaacgtcatttg
cgtgacgacgatttagttatatttaataggcagccgacacttcacaaaatgagtatgatg
ggtcacagagttaaagtgttaccatggtcaacattccgtatgaatttgagttgtacttca
ccatacaacgccgattttgatggtgatgaaatgaatttgcatgtcccgcagtcaatggag
acacgggccgaagttgaaaacattcatattacacccaggcagatcataactcctcaagca
aataaacctgtcatgggtattgtacaggacacgctcacagctgttagaaaaatgactaaa
cgagatgtgtttctgactaaagaacaggtaatgaatcttcttatgtttttgcctacatgg
gatggcaaaattccccaaccttgcatcctgaagccgacacccctctggactggcaaacaa
atatttaccctgatcattcctggtaatgtgaatatgattagaacacattctacacatcct
gatgaagaagatgatggcccctataaatggatatcacccggagacacaaaagttattgta
gaccatggagaactattaatgggtatattgtgtaaaaaatcactcggtgcctcggctgga
tcacttctgcatatttgtatgttggaattaggacacgaaacggcaggacggttttatggt
aatattcaaactgtaattaacaactggctccttctagaaggtcactcgattggtattgga
gatactattgctgacccgcaaacatatcaagaaattaaaaatactatcgtgaaagccaaa
gatgatgtaatagaggttatacagaaagcccacaatatggaattggagccgacccccggt
aataccctgaggcaaaccttcgaaaatcaagtaaatcgtatattaaatgacgctcgtgac
aaaactggaggttcagctaaaaaatctctcactgaatacaacaatctgaaagctatggtg
gtctccggttcaaaaggatctaacattaacatttctcaggttatcgcttgtgtgggtcaa
cagaatgtggaaggtaaacgtattccattcggtttccgtaaaaggacattgccgcatttc
attaaggacgattatggtcccgaatctaggggatttgtagaaaactcttatcttgctggt
ttgacaccttcggagttttacttccacgctatgggaggtcgtgaaggtcttattgatact
gctgtaaaaactgctgaaacaggatatattcaacgacgtctcataaaggctatggagtct
gttatggttaattatgatggcactgttagaaactctgttggtcaacttatccagttacgt
tatggagaagatggtttagcgggagaaactgtcgagttccaaaacctaccaacaattaag
ctatcaaataaagcttttgaaaagaagtttaagtttgatcccacaaatgaaagatacttg
aagagaatcttcaatgaggatatcattaaagaactaacagaatctggatatgttattgga
gatttagaaagcgagtgggatcaactaggaaaggacagatcggtgttgcgagaaattttc
ccaagcggagaatcaaaagttgtgttaccctgtaacttcaagagaatgatttggaatgtg
caaaaaattttccatattaataagagatcgactactgatttaagtccaataaaagttatt
caatctgtaagagatttattaaagaaatgtgttattgtggctggagaggatcgcctttcg
aaacaagccaatgaaaatgcgaccttactcttccaatgccttgtgaggtcaactttgtgc
gctaagcttgtatcagaagattatcggctctcaacagaagctttcgagtggttgatagga
gaaatcgaaactcgttttcaacaagctcaagcaaacccaggtgaaatggtaggagcccta
gctgctcaatctctgggagaaccagctactcagatgacattgaacaccttccactttgct
ggagtctcctccaaaaatgtaactctcggtgtgcctcgtctaaaagaaattataaatata
tccaagaagcctaaagctccctctctcactgtatttctaactggtggagctgctcgagat
gcagaaaaagctaaaaacgttttgtgtcgtttggaacacacaactttacgtaaagtaacg
gcaaacactgctatatactacgatcccgacccacagaatactgttattggtgaagatcaa
gagttcgtcaatgtttactatgaaatgcctgactttgatcccaccaaaatatctccatgg
ctgttgcgtattgagctggaccgtaagagaatgactgacaagaagcttactatggaacaa
attgcagaaaaaatcaatgcaggctttggagatgatcttaactgtatattcaacgacgat
aatgccgaaaaattggttcttcgtataagaattatgaacaatgaagagagtaaattccaa
gacaatgacgaggaaactgttgataagatggaagatgatatgttcctaagatgtattgaa
gcaaatatgttgtctgacatgactttacaaggtattgaagcgatagccaaagtttatatg
catttgcctcaaactgaagctaagaaacgtatagttattacggaacaaggagaattcaag
gcaattgcagagtggcttttggaaacggatggaacatctttgatgaaagtactttccgag
cgagatgtagacccgataagaacctttagtaacgatatctgtgagatattccaagtttta
ggtatcgaggcggtacgaaaatctgttgaaaaagaaatgaatgctgtattgcagttctat
ggtctatatgtaaactaccgtcacttggctttgctttgtgacgtaatgactgctaaaggt
caccttatggccattactcgtcacggcattaacaggcaagacactggcgcgttgatgaga
tgttccttcgaagaaactgtagacgtattgctcgacgccgcgagccacgctgaagtagat
cctatgagaggcgtctctgagaatattatcatgggacaacttcctagaatgggaacagga
tgttttgatttactactggatgctgaaaaatgtaagcacggcatggaaatgggtggtttg
ggcgtaggcctgggagtaggtggcggaatgtacttcggagtcggcacaccatccatgact
ccgcttatgactccttggtcgaaccagaatactcctggctatggtagcagtgtttggtct
cctggaccagtgggtagcagtatgactccgggtccatcattctcaccatcaggtgcatca
gacgcttcgggaatgtctccttcgtatagcagcgcttggtcgccacagcccggctctccc
ggttctcctggagccccgttgtcaccttacgcttcgccagccggcgtttctccgtcgtac
tctcccacaagtcctgtctatgctgctccgtcccccagtctcatcccaacttccccacac
tactcacccacaagcccgtcctactctccaacctcacctaactattccccaacctctcct
atttacaccccaacttctccaagctattcaccaacctcccctggctattcgcccacatcc
ccatcatattcacctacttcgccgagctattcccctacgtccccgagttactcacctact
agcccggcatattccccaacctctcctagttattcgccaacttcaccgagctactcacca
acaagctcaaactattctccgacgagtccgtcttattcgccgagtccagcttactcgccg
acttctccgggctactcgccgacttctccgagatattctccgaatagtccagtgtacact
tccggggcacacagttattcctcgtcatcaccaaattacacgcccacatcaccagcctat
tcacccacaaatcattcttattctccgacctcacctaataactactcaccgacatcacgc
aattactcgccttcatcacccaaatatttttcgacatctccaaagtattcgccgacatcg
ccatcggtatcaggaggtagtcctagatattcgccaaacagtcttcagtactctccaaca
agcccgcaatattcacctagcccggcgtactctccttcgtccccgcaacattccggaagc
tcgaattattcaccatcctcaccaaattactcaccgtcttcaccaaactattcatctcct
ggatattctccgtcctcctctaaatattccccaacatcgccaacattcacgccaacctca
aataattattcgccatcatcaccggcctattctcctgcttccggtggaccatcaacttat
tctccaacttctcctacatcccctacttatacacctacttcacctaattatgaagaagat
gatgattga
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integrated database retrieval system
