Pseudomonas nunensis: NK667_03235
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Entry
NK667_03235 CDS
T08997
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pnb
Pseudomonas nunensis
Brite
KEGG Orthology (KO) [BR:
pnb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pnb03009
]
NK667_03235 (rlmD)
Enzymes [BR:
pnb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NK667_03235 (rlmD)
Ribosome biogenesis [BR:
pnb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NK667_03235 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
MTS
PCMT
Methyltransf_23
Methyltransf_11
RrnaAD
Cons_hypoth95
Methyltr_RsmB-F
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_12
Methyltransf_4
DREV
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
UTO15393
LinkDB
All DBs
Position
702860..704212
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AA seq
450 aa
AA seq
DB search
MAKQERGLRFQPTGGSKAPQIPTGKKQRLSIERLANDGRGIAFFEGRTWFVIGALAGEEI
EARVLNAHGKVVEARTERVFQASELRRPAPCPHAGRCGGCSVQHLPHNEQLALKQRMLAE
QLSKVAGVEPQEWAAPLSGPEFGYRRRARVAVRWDMKAKKLEVGFRAAGSQDIVAITECT
VLVQPLQPIMTRLPEMLRRLSKPQALGHVELFSGSSLAVLLRHMAPLSEADLTILTDFCA
FHEAQLWLHGDGEPQPVDATQNLGYRLEQWGLDLAYRPGDFIQVNAGVNEAMVAQALDWL
KPQADERVLDLFCGLGNFALPLAKAVREVVAVEGVQAMVERAAANAASNNLHNTKFFQAD
LSQPLTEAEWAREGFCAVLLDPPRDGAFEVVRKLASLGAKRLVYVSCNPATLARDTVELI
KQGYRLKRAGILDMFPQTAHVEAMALFEAS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcaagagagaggcctgcgcttccaacccacgggcggcagcaaggccccacaa
attccgaccggcaaaaagcagcgcttgagcatcgagcgcctggcgaatgacggtcgcggt
atcgcgtttttcgaaggtcgcacctggttcgtcatcggcgcattggccggtgaagagatc
gaggcgcgcgtactcaatgcccacggcaaagtggtcgaggcgcgcaccgaacgggtgttc
caggccagcgaactgcgtcgcccggcaccgtgcccacacgccggtcgctgtggcggttgc
agcgtgcaacatctgccgcacaacgaacaacttgccctgaaacagcgcatgctcgccgag
caattgtccaaggtcgccggtgtcgaaccgcaagagtgggcagcgccgttgagcggtccg
gaattcggttaccgccgtcgcgcccgggtggcggtgcgctgggacatgaaagcgaaaaaa
ctcgaagtcggtttccgcgcggcgggcagtcaggacatcgtcgcaatcactgaatgcacg
gtgctggtacagcccttgcaaccgatcatgacccgcttgccggaaatgctccgccgtttg
agcaaacctcaagcattggggcatgtggaattgttcagtggctcgtcgctcgcagtattg
ctgcggcacatggcgccgttgtccgaggctgacctgacgatcctcacggatttctgtgcg
ttccatgaagcccagttgtggctgcatggcgatggcgaaccgcaaccggtcgatgccacg
caaaatctgggttatcgcctggaacagtggggcctggacctggcgtatcggccgggggat
ttcatccaggtcaacgccggggtcaacgaagcgatggttgcccaggcgctggactggctc
aaaccgcaagcggatgaacgcgtgctggatctgttctgcgggctgggcaactttgccttg
ccgctggccaaagccgttcgcgaagtggtggcggtcgaaggtgttcaggccatggtcgag
cgggcagctgcgaatgccgctagcaacaatctgcataacactaagttttttcaggccgat
ttatcccagcctttgaccgaagccgaatgggcgcgcgaaggcttttgtgcggtactcttg
gacccaccacgggacggtgctttcgaggtggtgcgcaagctggcatccctgggcgccaaa
cggttggtgtatgtgtcgtgcaacccggcaactctggcgcgcgatacagtcgaattgatc
aagcagggctaccggttaaaacgtgccgggattctcgatatgtttcctcagacggcacat
gtcgaggccatggcgttatttgaagcgagctag
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