Pseudomonas nunensis: NK667_03520
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Entry
NK667_03520 CDS
T08997
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pnb
Pseudomonas nunensis
Pathway
pnb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NK667_03520 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnb03019
]
NK667_03520 (rne)
03009 Ribosome biogenesis [BR:
pnb03009
]
NK667_03520 (rne)
Enzymes [BR:
pnb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NK667_03520 (rne)
Messenger RNA biogenesis [BR:
pnb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NK667_03520 (rne)
Ribosome biogenesis [BR:
pnb03009
]
Prokaryotic type
rRNA processing factors
NK667_03520 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
UTO15446
LinkDB
All DBs
Position
complement(762083..765355)
Genome browser
AA seq
1090 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLTEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHINQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVVAAAPVAAPVAAPEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPATTERPARNEERRN
GRQQSRNRNGRRDEERKPREERAPREERAPREPREERQPREAREETTTTPVVAREERAPR
APREERAPRAPREDRKPRGDREERPVRELREPLDAAPAAPVAAAAAAVAATTEERPARQP
REERAPRPPREERQPRAEQAAATSEEELLTNEEQQQEDGQEGAEGDRPRRRSRGQRRRSN
RRERQRDANGNVIEGSEESESADGSEASETNEAPSVADLAAGLAVTAAVASTVISAPAEA
QAHEQAERATAAVQETAPVEAPVVEATTPVEATAAPEVEVAPVREAQPEIQAAAEPAFVA
EPVVVAESVVETSTETVTEAVREVREEQTAFNWVAEPVASEPVVEAPAPVAEAPAVEAMV
SEPVVAAAEPAPVVEAPVVAQVAAPVVEAAPASALTENGRAPNDPREVRRRKREAERLQK
EAELAAAAAPAVAEPAPVVAEVVEAAPAPAAEVAADPVESVIDEAPRSVQDAVQQHEEAQ
EKEHEPKPLV
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccggattactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccccgaaggccgcgtcaacatcaaggacgtcctgaccgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctg
gccggtcgttatctcgtgctgatgccgaacaacccgcgtgccggcggtatctcccgtcgc
atcgaaggtgaagagcgcaacgaactgcgtgaagccctgaacggcctggttgcacctgcc
gacatgggtctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgctatcaaagaagcgtcgctggatcgttcc
gcgccattcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtcgtt
gaactgccttccggcggctccatcgttatcgatccaaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
cttgaagccgccgaagaaattgcccgtcagttgcgcttgcgcgacattggcggcctgatc
gtcatcgacttcatcgacatgacccctgccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagccgaccgcgctcgcgtgcaagtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgtcaacgcctgcgtccatcgcttggcgaaagcagcggcatcgtt
tgcccgcgttgcaacggcaccggcatcatccgcgacgttgaatcgctgtcgctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcacaagtg
ccgatcccggtggccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgcatcgtcattctgccgaacgatcacctcgaaacgccgcacttc
gaagttcagcgtctgcgtgatgacagcccggaagcccacatcaaccagtccagctacgaa
atcgctgctgccgctgccgaagtggaagaagtccagccagccgctgcgacccgcaccctg
gttcgccaggaagccgcggtcaagactgcaccggcccgtgccaacgcaccggtgccgact
gaagtcgtcgctgccgctccagttgctgcaccggtcgccgcgccagagccaagcctgttc
aaaggcctggtgaagtcgctggtcagcctgttcgctaccaaagaagagccagcggctccg
gttgtggttgaaaaaccagcgaccaccgagcgtccggcccgtaacgaagagcgtcgcaac
ggtcgtcagcagagccgcaaccgtaacggtcgccgcgatgaagagcgcaagcctcgtgag
gaacgtgcaccgcgtgaagaacgcgcaccacgtgagccacgcgaagagcgtcaaccacgc
gaagcccgtgaagagaccaccactaccccggtagtcgctcgcgaagaacgcgcaccacgc
gcccctcgtgaagaacgtgcaccgcgcgctcctcgtgaagaccgcaagccacgtggcgac
cgcgaagagcgtccggtacgtgaactgcgcgagccactggatgccgctcctgctgcgcca
gtcgctgccgctgctgctgccgttgctgctaccactgaagagcgtccagcccgtcagcca
cgtgaagaacgcgcaccacgcccaccgcgtgaagagcgtcagccacgtgcagaacaagcg
gctgcaacctccgaagaagaactgctgaccaacgaagagcagcaacaggaagacggtcag
gaaggcgccgaaggcgatcgtccacgccgccgctcccgtggccagcgtcgtcgcagcaac
cgtcgcgagcgtcaacgtgatgccaacggcaacgtgatcgaaggttcggaagagtccgag
tccgccgacggtagcgaagccagcgaaaccaacgaagcgccaagcgttgccgatctggcc
gccggcctggctgttactgcagccgttgccagcaccgtgatcagcgcgcctgccgaagcc
caggctcacgagcaagccgaacgcgccactgctgctgttcaggaaactgcaccagtagaa
gcgccggtcgttgaagcgactactccggtagaagccacagccgctccggaagttgaagta
gcgccggttcgtgaagcacagcctgaaattcaagccgctgccgagcctgctttcgtcgcc
gagccagtggttgtcgcagaatcggttgtcgaaacatcgaccgaaaccgtgaccgaagct
gtccgcgaagtgcgcgaagagcaaaccgcgttcaactgggttgccgagccggtagcctcc
gagccagtcgtcgaagcaccagcgccagtcgctgaagcaccggcggttgaagcgatggtc
tccgagccagtggttgccgctgccgagcctgctccagtggttgaagctccggttgtcgca
caagtcgctgcaccggtggtcgaagccgcccctgccagcgccctgaccgaaaatggccgc
gcgccgaacgacccacgtgaagtgcgtcgccgcaagcgtgaagccgagcgtctgcagaaa
gaagccgaactggctgccgctgctgctccggccgttgccgagccagcaccggttgtggct
gaagtcgtcgaggcagctcctgctccggccgctgaagtcgctgccgacccggttgaatcc
gtgatcgacgaagcacctcgctccgttcaggacgcggtacagcaacacgaagaagcccag
gaaaaagaacacgagcctaaacccctcgtctga
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