Pseudomonas nunensis: NK667_16300
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Entry
NK667_16300 CDS
T08997
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pnb
Pseudomonas nunensis
Pathway
pnb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NK667_16300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnb03019
]
NK667_16300
03400 DNA repair and recombination proteins [BR:
pnb03400
]
NK667_16300
Enzymes [BR:
pnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NK667_16300
Messenger RNA biogenesis [BR:
pnb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NK667_16300
DNA repair and recombination proteins [BR:
pnb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NK667_16300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UTO17864
UniProt:
A0ABY5EQJ4
LinkDB
All DBs
Position
complement(3801678..3804155)
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AA seq
825 aa
AA seq
DB search
MQAQWNALQAALLNPGLVCETSTLSESFFIRLLKVFRDLKSGPADRAAVCRDALGCALAH
SIVDPVLRLPANAVSDMHLSRAGVVRDAMTGYVRMADVQNNDALDVYGHHPRRHLKAVPM
DVALRQRLKNEQFASYQGLGQQAAIRTVLTSPPDSTLIINLPTGSGKTLVIHALSLFSGK
QKLVLVIVPTVGLALEQATRAAEVLNRADCGHGGSYVLYGGQADAEHQQVLERLKDGGQR
ILFCSPELASGKLRPALFRLAQQGQLEALVVDEAHIIDHWGAGFRPEFQLLAPLFRSLRE
HSPKGIRTVLMSATFSDPTLQLLKDSFVLEGKQAIEIHGSFLRPELNFNVLKTADPTEHQ
LAVLDALRCLPRPLILYTTQKKEAENWKHLLLGNGFTRVGLFHGSTAADQRDALIRKWGD
DELDIMVATSAFGVGMDKSGVRSVLHAAVPESLDRFYQEAGRGGRDGTACWSWLIYHPGQ
LSVAERLSQEKLISAELGVERWKMLLESRESSGEYFTISRSALHRGLPRHSKRNEKWNLR
TLQLMQRAGVIRLFFTPPEPPQFEGEITPENEQVLNDYFEDYFSRIGVQILIDAHLAPEV
WQQQVAPRRDQEKKARADGFSRLTRWLKDTRQPLCWQLDEFYRPSGIAPERSCGGCPGCR
NQGRGAFTPTLGHLFHLRGVEPLSVPSWMPSSQLLRVRYRPESYARVTSKAMLHNWRFWL
QNLLRTRQVQAVRASQVVLDEMYQDDALKTLPFWCALAPQDSAGGWLELVLLMPGETHLP
LPSFDDPLRVIVAPEGLADPYLPYRTWWECHPGSKVLENFVQESQ
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcacagtggaacgccctacaagcagcattgttgaatccaggcttagtttgcgag
accagcacactgtctgaatcgttttttattcggttattaaaggtttttcgggatcttaaa
tcaggtccggcggaccgcgcggcggtgtgccgggatgctttgggttgtgcattagcgcac
agcatcgtcgaccccgtgttgcgactacctgccaatgccgttagtgacatgcatctttct
cgtgctggagtagtccgggatgccatgacgggttacgtgcggatggcggatgttcaaaat
aatgatgcgcttgatgtttatggacatcatccccgtcgacatctgaaggccgtgccaatg
gatgtagctctgcggcaaaggctcaaaaatgagcagttcgcttcataccaggggcttggg
cagcaagcagcaatacgtacagttttaacatcccctcctgacagtacgctgatcatcaac
ctgccaaccggtagcggaaagaccctagtcattcatgcgctgagcctgttttcgggcaag
cagaaactggtactggtcattgtaccaacagtagggttggcgctggagcaggcaacccgt
gccgctgaggtacttaaccgtgcagactgtggtcatggaggtagttatgtcttgtatgga
ggccaggcggatgctgagcaccagcaagtcctcgagcgtttgaaagacggggggcagcgt
attttgttctgctcgccggagttagctagcggcaaactccggccggcgctttttcggttg
gcacagcaagggcagttggaggctctggttgttgacgaggcgcatattattgaccactgg
ggggcaggatttcgtcctgaattccagttgctggcacccctgtttcgctcgctgagggag
cattcaccgaaaggcatacgtacagtcttgatgtcggcaaccttcagtgatccgacgctg
cagttgcttaaagattcttttgttctggaaggcaaacaagccattgaaattcatggcagc
tttttacgcccagaattgaattttaatgtgttgaaaactgcggaccctacagaacatcaa
cttgctgtattggacgcgcttcggtgtttacctcggccactgattttgtataccacacag
aaaaaagaggctgaaaactggaaacatttactgcttggcaatgggttcactagagtcgga
ttattccatggctcaacagccgcagatcagcgcgacgcgctgattcgcaagtggggagat
gacgaactagacatcatggtcgctacctccgccttcggtgtaggcatggataagtccggg
gtgcgttcggtactgcatgcggctgtaccggagagtttagatcggttctatcaggaggct
ggtcgaggggggcgtgacggtacagcctgctggtcttggcttatctaccacccaggacag
ttgagtgtggcggaaagactttcgcaggagaagttgatctctgcggagttgggggtggag
cgctggaaaatgttgttggaaagcagggagagcagcggtgaatatttcacaatttctcga
tctgctctgcatcgcggcctgccacgacatagcaagcgtaatgaaaaatggaacctgcgt
accctgcagttgatgcagcgtgcgggggttattcgtctgttttttactccacccgaaccg
ccacagttcgagggtgagataactccagagaatgagcaggttcttaatgattattttgag
gattatttcagccgtattggcgttcagatcctcattgacgcccatttggctcctgaggta
tggcagcaacaggtagccccgcgccgcgatcaggaaaaaaaggccagggctgatggtttt
tctcgtctaaccagatggctaaaggacacgcggcaaccgctatgttggcagttggatgag
ttttatcgccctagtggcatcgcccctgaacgtagctgtgggggatgtcctggctgtcgt
aatcaaggacgaggcgcttttaccccgacgctggggcatctattccatctgcgcggcgtg
gagccattatctgttccgagttggatgccatcttcacagttgttgcgggtccgctaccga
cctgagtcgtacgctagggttacgtccaaagcgatgctgcacaattggcgtttctggttg
cagaacttactgcgtaccaggcaagttcaggctgtacgcgccagtcaggtagtgctggat
gagatgtaccaagacgacgcccttaagacgctaccattctggtgtgcgcttgcacctcaa
gatagtgctgggggatggctggagttggtgctactgatgcctggagaaactcatttgcca
ttgccgagttttgatgatccgctaagagttattgtcgcacctgaaggattggctgacccg
tatttgccatatcgcacgtggtgggaatgtcaccccggcagcaaggttttggaaaatttt
gtacaggagtctcaataa
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