Pseudomonas nunensis: NK667_17550
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Entry
NK667_17550 CDS
T08997
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pnb
Pseudomonas nunensis
Brite
KEGG Orthology (KO) [BR:
pnb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnb03032
]
NK667_17550 (topA)
03400 DNA repair and recombination proteins [BR:
pnb03400
]
NK667_17550 (topA)
Enzymes [BR:
pnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NK667_17550 (topA)
DNA replication proteins [BR:
pnb03032
]
Prokaryotic type
DNA Topoisomerases
NK667_17550 (topA)
DNA repair and recombination proteins [BR:
pnb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NK667_17550 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UTO11980
UniProt:
A0ABY5ECD1
LinkDB
All DBs
Position
complement(4042359..4044986)
Genome browser
AA seq
875 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGAT
VRFDVAREKGEAFKPLNEAQAMAALEKLKASSYSIAKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVTMARTYIEGEFGKKYLPENPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
TVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDAMKLIKLDPTQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLAES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESAEGGMRANQPVMT
DIPCVVCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCDGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNATCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEIVPHKDEIDPKYHFLCEAPKKDPDGLPSVIRYSRKTK
EQYVQTEVDGKPTGWKAYYDGGKWTVEDKRPAAKA
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggtaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaagagccagccgccaagcgcggcaaggccgccgcgggtgaa
ggtccggtgctcacgccgaaagagaaagcgcgcaagcagcttgtctcgcgtatgggtgtc
gatcccgatcatggctggaaagccaagtacgagatcctcccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaagatgctgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggtgatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgattcaggaagccttctccaag
ccgggcgagctggacatcgaccgtgtaaacgcccagcaggcgcgtcgtttcctcgaccgc
gtggtgggttacatggtttcgccgctgctgtgggccaaggtcgctcgcggcctgtccgcc
ggtcgcgtgcagtcggttgcggtcaaactggttgttgagcgtgagcgtgaaatccgcgcg
ttcaacccggaagagtactgggaagtccacgctgatctcggcaccgccaagggcgctacc
gtgcgcttcgacgtggcccgcgagaaaggcgaagccttcaagccgctcaacgaagcccag
gccatggccgcgctggagaagctcaaggcttccagctacagcatcgccaagcgcgaagac
aaaccgaccagcagcaagccgtcggcaccgttcatcacctccaccctgcagcaggccgcg
agtaaccgcctgggcttcggggtgaagaaaaccatgatgatggcccagcgtttgtacgaa
gcgggctacatcacgtatatgcgtaccgactccaccaacctctcggttgatgcggtgacg
atggcgcgtacttatattgaaggcgagttcggcaagaagtacctgccggaaaaccctaac
gtctacagcagcaaggaaggcgcacaagaggctcacgaagcgattcgtccctccgacgcc
aataccgagccaagcaagctgtcgggcatggagcgtgatgccgagcggctctacgagctg
atctggcgccagttcctcgcttgccagatgctgccagcgcagtacctgtcgaccacggta
accgtgggtgccggtgatttcgagctgcgtgccaagggccgcatcctgaagttcgacggt
tatacccgcgtcatgccgcaaatcgccaagccgggcgatgacgatgtgctgccagacatg
gcccagggcgatgcgatgaagctgatcaagcttgatccgacccagcacttcaccaagccg
ccggcccgttactcggaagcgagcctggtaaaagaaatggaaaaacgcggcatcggtcgt
ccttcgacctacgcagcgatcatttcgaccatccaggaccgtgggtacgttgcgctgcac
aaccgtcgtttctattcggaaaagatgggtgacatcgtcactgagcgtctggccgagagc
ttctccaatctcatggactatggcttcaccgccggcatggaagagaacctcgatgacgtg
gctcagggcgaacgtgactggaaaaacgtgctcgacgagttctacggcgacttcaagaag
aaactcgaagtagccgaaagcgctgaaggcggcatgcgtgccaaccagccagtgatgact
gacattccatgcgtggtgtgcggtcgtccgatgcagattcgtaccgcatcgacgggcgtg
ttcctcggctgctcgggctacagcctgccgccgaaagagcgctgcaaggccactgtcaac
ctggtgccgggcgacgaaatcgccgcggacgacgagggtgaatcggaatccctggtgctg
cgcggcaagcaccgctgcccgatctgcagcacggcgatggacgcttacctgctggatgag
aagcgcaagctgcacatctgcggtaacaacccggattgcgacggctacgaaatcgaagaa
ggcagttatcgcatcaaaggctatgaaggtccgagcctggaatgcgacaagtgcggcagt
gaaatgcagctcaagaccggccgtttcggcaagttcttcggctgcaccaatgcaacctgc
aagaacacccgcaaactactgaaaagcggtgacgcggcgccgccgaagatggatccggtg
aagatgcctgagctgaaatgcgaaaaggtcaacgacacctacatcctgcgcgacggggct
tccggcctgttcctggcggcgagccagttcccgaaaaaccgcgagacccgtgctccgctg
gtgatcgagatcgtgccgcacaaggatgagatcgatccgaagtaccacttcctgtgcgaa
gcaccgaagaaggatccggatggcctgccttccgtgatccgctacagtcgcaaaaccaaa
gagcagtacgtgcagactgaagtcgatggtaagccgacaggctggaaggcgtactacgac
ggcggtaagtggacggttgaagacaagcgtccagccgctaaagcttaa
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