Pseudomonas nunensis: NK667_19860
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Entry
NK667_19860 CDS
T08997
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pnb
Pseudomonas nunensis
Brite
KEGG Orthology (KO) [BR:
pnb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnb03019
]
NK667_19860 (hrpA)
Enzymes [BR:
pnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NK667_19860 (hrpA)
Messenger RNA biogenesis [BR:
pnb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NK667_19860 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
AAA_25
nSTAND3
NACHT
T2SSE
SLFN-g3_helicase
Dicer_dsRBD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UTO12418
LinkDB
All DBs
Position
complement(4541990..4545901)
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVTRMQASCDQVLARR
ASLPVIRYDDSLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAFERSERKSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICIRLFS
EEDFMGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRNLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDVDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKEPADYPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIIVGRRPVHYGPIDPVVSREFFIREGLVRGEIQSKAKCLTANAQLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRVNSQKDPQLLIMREEDVLARE
ASEVTALHYPDTLHIGDLELALSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGVI
EAKCVALVRNLPKALRKNFVPVPDFVKAALQRMTFAEGSLPLALGRELLRMTGARVSDEA
WAEASQQVDSHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKNQQPVE
PKVFAAVAEKTQQKIAGLSMTVYPALVEESGTVKEGRFSTPAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGLTELGLMYRELGRIDALVEDILLASLDSCILDGEDPLPRDGAGLASL
AERKRGGWTEHAERLAKLTLEILKLWHALQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPMQWLKELPRYLKAVEQRFEKIGAQVQRDRVWAGELSGLWTQYQTRANKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLNKQWTQVEP
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgaatcgccttccatcgacaaactgctgaaaaacctcgatcacgccatgctc
gccgaccgccaccggctgcggcggcagttgcttgagctgcgcaagaaacctgatgaggcc
aagctggcccagtgggtgacgcgcatgcaggcgtcttgtgatcaggtgttggcgcggcgt
gccagcctgccggtgattcgttacgacgacagtttgccgattgccgccaagcgcgacgaa
atcaaagaggcgctgctcaagcatcaggtgctgatcattgccggcgaaaccgggtcgggc
aaaaccacccagttaccgaaaatttgcctggaaatcggccgtggtcagcatggtctgatc
ggccacacccagccgcgccggattgcggcgcgcagtgtggcgagccgggtggccgaagaa
ctggcgacgccgctgggcgcgctggtcggctatcaggtgcggttcgaggaccagagcgat
tccaacaccctgatcaagctgatgaccgacggcattctgctggcggaaacccagaacgac
cgctacctcgaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctcaac
atcgacttcctgctcggctacctgaaaaccctgctgccacgacgcccggacctgaaagtc
atcatcacttcggcgaccatcgacctggagcgcttctccaagcatttcgatgacgcgccg
attgttgaagtctcgggccgcaccttcccggtggaaacctggtatcgcccgctgacgctt
gagcaggacgaagagggcaaccgcgtcgaggacgacttgaccgtggaccaggcgatcctc
gccaccctcgacgaaatcgccgcgtttgaacgcagcgagcgcaagagtcccggcgatgtg
ttggtgttcctgcccggcgagcgcgagattcgtgacgccgccgacatgctgcgcaaagcc
cagctcaagcacactgaaatcctgccgctgtacgcgcggttatcgccggccgagcagcag
cggattttccagtcgcacccaggccgacgcgtggtgctggcgaccaacgtcgcggaaact
tcgctgaccgtgccgggtattcgttacgtgatcgacagcggcaccgcgcgcatcagtcgt
tacagctaccgcgccaaggtccagcgcctgcccatcgaagcgatttcccaggccagcgcc
aatcagcgtaaaggtcgatgcgggcgggtcgagccgggtatttgtattcgtctcttcagc
gaagaagatttcatgggccggccggaattcaccgatccggaaatcctgcgcaccaacctt
gccgccgtgattctgcagatgctgcatctgcgcctcggcgagatcaccgatttcccgttt
atcgaaccgccagatggcaaagccatcagcgacggtttcaacctgctgcaagaactctcg
gcagtcgaccgcaacagccaactgacgccgctagggcgcaatctggcgcgcttgccggtg
gacccgcgcatgggccggatgctgctggaagcggcgaaactcggcagcttgcaggaagtg
ttgatcgtcgccagcgccatgtcgatccaggacccgcgcgagcgtccgccggaacgccag
caagcggcggatcaggctcacgcgcaatggaaagacgtggactcggacttcgccgggctg
gtcaatctgtggcgcggttttgaagaacagcgccaggcgctgaccgccagtccgttgcgg
aactggtgccgcaagaatttcctcaactacttgcgcctgcgcgagtggcgcgactcccat
cgccagttgagcctgatctgccgcgacatgcagctcagcctcaataaagaaccggcggat
tacccgaaactgcacaaagccgtgctttcggggctgctcagtcagatcggccagaaaacc
gaggacggcgactacctcggcgcgcgtcagcggcgtttttggattcacccgtcgtcgggc
ctgggcaagaagcgtccgcagtggctgatgaccgccgaactggtggaaaccaccaagctc
tatgcgcggatggtcgccaagatcgacgccgactggatcgagccgttggccgggcacctg
atcaagaaaaaccacttcgaaccccattgggagaagaagcgcggccaggtcgtggcgttc
gaacagatcaccttgttcgggctgatcattgttggtcgccggccggtgcattacgggccg
atcgacccggtggtgtcccgagagtttttcattcgcgaaggtttggtacgtggggaaatc
cagtccaaggccaaatgcctgacggccaatgcgcagttgctggaacagctcgacgaactg
gaagccaaggctcgtcggcgcgatatcctggccgacgaggaaaccctgttcgctttctac
gacgcgcgcctgccggcggagattcatcagaccgccacattcgacagttggtatcgggtc
aacagccagaaagacccgcaactgctgatcatgcgcgaagaagacgtgctggcccgcgag
gccagtgaagtcaccgcgctgcattacccggacactttgcacatcggtgatctggaactg
gccctgagttatcacttcgaaccgaaccacccgcgtgacggcgtgaccctgcgcgtgccg
gcgccgctgttgccgatgctgccgccggaacgcctggaatggttggtgcccggcgtcatc
gaggccaagtgcgtggcgttggtgcgcaacctgcccaaggccctgcgcaagaatttcgtg
ccggtgccggacttcgtcaaagccgcgttgcagcgcatgaccttcgccgagggctcgttg
cccctggcgttgggccgcgaactgttgcgcatgaccggtgcgcgggtcagcgatgaagcc
tgggcggaggcctcgcaacaggtcgacagtcatttgcggatgaacctggaaatcgtcgac
ggtcagggcaagttccttggcgaagggcgggatctggccgagctgaccgcacgtttcgcc
gaagccagccaagccgcgttggcggtgccgcaaaccgcgaaaaaccagcaaccggtggag
ccgaaagtcttcgccgcagtggccgaaaaaacccagcagaagatcgccgggctgtcgatg
acggtgtacccggcgctggtggaagagagcggcacggtcaaggaagggcgtttctcgacc
ccggccgaggctgagttccagcatcgccgtgcgttgcagcgtttgttgatgcagcaattg
gccgagccggcgaagttcctgcggggcaagttgccggggctgactgaactgggcttgatg
taccgcgaactggggcgcatcgatgccttggtcgaagacattctgctggcgagcctcgac
agctgcattctcgacggcgaagacccgttgccacgcgatggcgccgggttggcctcactg
gcggagcgcaagcgcggcggctggaccgaacacgccgagcgtctggccaagttaacgttg
gagattctgaagctctggcacgctctgcaaaagcgtttcaagggcaagatcgacctggcc
caagccgtggcgttgaatgacatcaagcagcagctcagtcatctggtgtatccggggttt
gttcgggaaaccccgatgcaatggctcaaggagctgccgcgttacctgaaagcggtcgag
caacgttttgagaagatcggcgcgcaagtgcagcgggatcgggtctgggccggcgagttg
tccggtttgtggacgcaataccagacccgcgccaacaaacacgcccaggaaggcaagcgc
gatccgcagctggaactgtatcgctggtggctggaggaataccgggtgtcgctgttcgcc
cagcaactggggaccaaggtgccgatctccgataagcgcctgaacaaacagtggacgcag
gtcgaaccataa
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