Pseudomonas nunensis: NK667_28115
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Entry
NK667_28115 CDS
T08997
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
pnb
Pseudomonas nunensis
Pathway
pnb02025
Biofilm formation - Pseudomonas aeruginosa
pnb03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pnb00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
NK667_28115 (tssM)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
NK667_28115 (tssM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pnb02044
]
NK667_28115 (tssM)
Secretion system [BR:
pnb02044
]
Type VI secretion system
Imp/Vas secretion system core components
NK667_28115 (tssM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related_N
IcmF-related
IcmF_C
IcmF_helical
AAA_29
SRC-1
RsgA_GTPase
DUF4131
Motif
Other DBs
NCBI-ProteinID:
UTO13987
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All DBs
Position
6393054..6396593
Genome browser
AA seq
1179 aa
AA seq
DB search
MKKFFKKVGAFLRKTWVWTLLVVLFLALLVWFVGPLLAVDDYKFWEGSTSRLLTISVLFL
IWGLTMVFVSWRAGVRKKAIEDTEDGQDRIRREELIDEEQKELKVRFKDALKTLKTSSLY
RGRSERWRSDLPWYLLIGPQGSGKTSLLDFSGLEFPINKIDRKLTRDTLGTRHCDWYFAD
HGVLIDTAGRYLTQPDAEVDGSAWSTLLDLLRKRRRNRPLNGVLVTIPVETLLGGSEQDL
DTLARQVRARLQDVHQKLHVDVPVYLVLSKADRLLGFDEFFDQLTREESDQVLGTSFRKE
QSGTDVAVLRAEFEELLRRLNSQVIMRMHQERDTQRRGRILDFPHQLGQIGERLCLFVDM
AFTGNRYQRVSQLRGFYLTSAPHLTQEMDQTTAGIGANLGINSGVLPTLRSGRSRFIHHL
LSRVIFPEADLAGLDKRERSRIHWGQRALYVGALAALALFGMLWAGGFSANYERLENLRT
LAQNWTQSRSALTPRDDSMAVLKTLDSSYAATQVFPKKGDVSYHERGGLYQGEESNPVVK
AAYERELQAQLLPRVATLLEGQIRANMQDRERLLNSLRAYLMLNMKDRRDAGWLKDWVAT
EWSQRYTGNTAVQNGLNTHFERLLEQPFIYPLNDQLVAQARQVLRSESLANVVYRMLREQ
ARNLPEYRLSQHMGPQASLFVGTDYVIPGFYTQQGYQQYFSVQGATLVSDMLRDNWVLGE
GSGISGMDLRRLMVELEQLYFRDYANFWSEAVGQVALPAISDFSEGAEQLAGLTSANSPV
LQLLVEVRENTRFPADAEPVDQAADAAGALADQKGKLGKVGKLASAVADKASDMAAAKNL
PDTAKKSLQRRFEPLHRLLDDNNGPAADLTPALTALNDLQLQVASLARASSPEQAAFEMA
KTRMGAQRDALSNLRNASNRLPRPVSVWFNVLAEDTWRLVLNDSYQYLNQRYQSELYGFY
GKAINKRYPFSAHSTSDVAISDFREFFKAQGIVDRFFDTYMRPFVSGDPGNYRMRSVDGH
SLPISKVYLDQMAAAQTIRQSFFAENPAEPQVQFKLEPYTLDPAVSRSEFKFGDKTMEYR
HGPILPMAFKWPTDAEDGRTSLVLDKMVGRPIGIEKNTGPWSLFRLFDLMQTEYLNGRDV
LVLKADVGGLRANYLLSSQRTPNPFDMGVLRTFRMPVQL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagtttttcaagaaagtcggcgcattcttgcgcaagacctgggtctggaccctg
ctggtggtgttgttcctcgcgctgctggtgtggttcgtcgggccgctgctggccgtagat
gactacaagttctgggaaggttcgacctcccgcctgctgaccatcagtgtgctgttcctg
atctggggcctgaccatggtcttcgtcagctggcgcgcgggtgttcgcaagaaagccatc
gaagacaccgaagacggccaggatcgtatccgccgtgaagagctgatcgacgaagagcag
aaagaactgaaagtgcgtttcaaggacgcgctgaaaaccctcaagacttcgagcctgtat
cgcggtcgcagcgagcgctggcgcagtgatttgccctggtacttgctgatcggtccacag
ggcagcggcaagaccagtttgctggacttctcgggccttgagtttccaatcaacaagatc
gaccgcaaactgacccgcgacaccctcggcacccgtcattgcgactggtacttcgccgac
catggcgtcctgatcgacaccgctggccgttacctgacccagccggatgccgaagtcgat
ggcagcgcctggagcactttgctcgacctgctgcgcaagcgtcgccgcaaccgtccgttg
aacggcgtgctggtgaccattccggtggaaaccctgctgggcggcagcgagcaagacctc
gacaccctggcacgccaggtccgtgcgcgtttgcaggatgtgcatcaaaagctgcacgtc
gatgtgccggtttacctggtgttgagcaaggctgatcgcctgctcggcttcgacgagttc
ttcgatcaactgacccgcgaagaaagcgatcaggtgctcggcaccagtttccgcaaagag
caaagcggcaccgacgtggcggtattgcgcgccgagttcgaagagctgctgcgtcgcctg
aacagccaagtgatcatgcgcatgcaccaggagcgcgacacccagcgccgtggccgcatc
ctcgacttcccgcatcaactggggcagatcggcgagcgcctgtgcctgttcgtcgacatg
gcgttcaccggcaaccgctatcagcgtgtcagccagttgcgtggtttctacctgaccagc
gcaccgcacctgactcaagagatggaccagaccaccgccggcatcggcgccaatctgggc
atcaactctggcgtgctgccgaccctgcgcagtggtcgttcgcgcttcattcaccatttg
ctcagccgcgtgattttcccggaagccgatctggctggcctggacaagcgcgaacgcagc
cgcatccactggggccagcgtgccttgtacgtgggcgcactggcggcgttggcactgttc
ggcatgctctgggctggcggtttctccgctaactacgagcgtctggaaaacctgcggacc
ctggcacaaaactggacccaatcacgctcggcactgaccccgcgtgatgattccatggca
gtgctgaaaaccctcgacagcagctacgcggcgactcaggtgttcccgaaaaagggcgac
gtgagttaccacgaacgtggcggtctgtatcagggcgaagagtctaacccggtggtcaag
gccgcctacgagcgtgagcttcaagcgcagctgttgccacgggtcgcgaccctgctggaa
gggcagatccgcgccaacatgcaggaccgcgagcgcttgctcaacagcctgcgtgcgtac
ctgatgctgaacatgaaggatcgccgcgacgccggttggctcaaggattgggtcgccacc
gagtggtcccagcgttacaccggcaacactgcggtgcagaacggcttgaacacgcacttc
gagcgtttgctggagcagccgtttatctacccgctgaacgatcaactggtggcccaggcg
cgtcaggtcttgcgcagcgagtccctggccaacgtggtttaccggatgctccgcgagcag
gcccgcaacctgccggaataccgtttgagccaacacatggggccgcaggcttcgttgttt
gtcggtactgactatgtgatcccggggttctacacccaacagggttatcagcagtacttc
tcggtgcagggcgctacgctggtcagcgatatgctgcgtgacaactgggtgctgggcgaa
ggctcgggcatcagcggcatggacttgcgtcgcctgatggtcgaactggaacaactgtat
ttccgcgactacgccaacttctggagcgaagccgtgggccaggttgccttgccggcgatc
agcgacttcagcgagggcgccgagcaactggcgggcctgacctcggccaactccccagtc
ctgcaactgctggtggaagtgcgcgagaacacccggttcccggcagatgccgagccggtt
gatcaagccgctgacgccgctggcgcgctggccgatcagaaaggcaagttgggcaaggtt
ggcaaactggcgtccgccgtggcggacaaggcgtccgacatggccgccgccaagaacctg
ccggacaccgcgaagaaatccctgcaacggcgcttcgaaccactgcaccgtctgctggat
gacaacaacggcccggctgctgatctgaccccggcactgaccgcgctcaacgacctgcaa
ctgcaagtcgcaagcctggcccgcgccagttcgccggaacaggctgctttcgaaatggcc
aagacccgcatgggcgcccagcgtgatgcgctgagcaacttgcgcaatgcgtccaaccgt
ttgccgcgtccagtcagtgtctggttcaacgtgttggccgaagacacctggcgtctggtg
ctcaacgattcctaccagtacctgaaccagcgctaccaaagcgagctgtacggtttctat
ggcaaggcgatcaacaagcgctatccgttcagcgcccacagcaccagtgatgtggcgatc
agcgacttccgcgagttcttcaaggcccagggcatcgtcgatcgcttcttcgacacctac
atgcgtcccttcgtcagcggcgatccgggcaactaccgcatgcgcagcgtcgatggtcac
agcctgccgatctccaaggtctacctcgaccagatggccgcggcgcaaaccattcgccag
agcttcttcgccgagaacccggccgagccgcaagtgcagttcaaactggagccgtacacc
ctcgacccggccgtcagccgttccgagttcaagtttggcgacaagaccatggaataccgt
cacggtccgatcctgccgatggccttcaaatggccgaccgatgctgaagacggtcgcacc
agcctggtcctcgacaaaatggtcggtcgcccgatcggtatcgagaagaacaccggccca
tggtcgctgttccgtctgttcgacctgatgcagaccgagtacctgaacggtcgcgatgtg
ctggtcctgaaagcggacgtgggtggcctgcgcgccaactacctgctgtcgagccaacgc
acgccgaacccgttcgacatgggcgtgctgcgtaccttccgtatgccggtgcaactctga
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