Pseudomonas nunensis: NK667_29695
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Entry
NK667_29695 CDS
T08997
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pnb
Pseudomonas nunensis
Pathway
pnb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NK667_29695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnb03019
]
NK667_29695
Enzymes [BR:
pnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NK667_29695
Messenger RNA biogenesis [BR:
pnb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NK667_29695
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UTO14276
UniProt:
A0ABY5EG75
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All DBs
Position
complement(6716055..6717938)
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AA seq
627 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPNKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGNLMGFDSSAVEAEKPEVRERPDVRNPRNPRGPRGDGPTGTGGGGG
RKDKGKDKGGKEKPAATGRGDRPAREHKPREGTPAREQQRPAPRAAAADRAPDEFLDDDV
DNFGNRVDYVPQAKPAQGRGRRPGAPAQGAAAGAGAGAPRTGGKPQGRQSGPRSSDGATT
GTPPAKRSGPRNGAPRDGQARREESRNRRPARDDQPRSEPAVQNPRGPAPKIIHKESKTD
RFPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggctcagacaggtactggtaaaaccggcggcttcgcccttccgattctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtactggtcctgacccctacccgcgaactcgcggctcaagtacacgagagcttcaag
gtctatgcccgtgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaagttcaagccatgtcccgcggtgttgacgtgctggtggcctgccctggccgcctg
ctcgacctcgccggccaaggcagcgtcgatttgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaaaaaggtcctcgcccgt
ctgccgaacaaacgccagaacctgctgttctcggcgacgttctccaaagacatcaccgac
ctcgccggcaagctgctgcacaatccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgaacagcgtgtgttccgcctggccgccagccacaagcgttcgctgctg
gcgcacctgattaccgccggcgcctgggaacaggttctggtcttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaaacacggcctgagcgccgttgccatccac
ggtaacaagagccagaacgctcgcaccaaagccctggccgacttcaaggccggtgaagtg
cgtatcctggtcgccaccgacatcgccgctcgcggcctcgacatcgaccagttgccacac
gtggtcaacttcgaactgccgaacgtcgatgaagactacgtgcaccgtatcggccgtact
ggccgtgccggtcgctcgggcgaggcgatctcgctggtggccccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaagcagaagattgccgacggcaacctgatgggcttc
gactccagcgctgtagaagccgagaaaccagaagtccgcgagcgtccggatgtgcgtaac
ccgcgcaacccacgtggcccgcgcggcgacggtccgaccggcactggcggtggcggcggt
cgtaaagacaaaggcaaggacaagggcggcaaggaaaaacctgctgccactggccgtggc
gatcgcccggcccgtgaacacaaaccacgcgaaggcaccccggctcgcgagcaacagcgt
ccggcgccacgcgctgccgctgctgatcgtgctccagacgagttcctggacgacgacgtg
gataacttcggtaaccgcgttgactacgtgcctcaggccaaaccggcccagggtcgtggt
cgtcgtccaggtgctccggcacaaggtgcggcagctggcgctggcgcaggtgctccacgt
accggcggcaagcctcagggtcgccaaagcggtccacgcagcagtgacggcgccaccacc
ggcaccccgccagccaagcgcagcggcccacgcaacggcgctccacgtgacggtcaggcc
cgtcgcgaagagtcccgcaaccgccgcccggcccgtgacgaccagcctcgttcggaaccg
gccgtgcagaacccgcgtggcccggcaccgaagatcatccataaagagtcgaaaaccgat
cggttcccgactcctgagcaactggatcaactgccaggtcgcccgcgcggcgaaaaacca
gccttgctgacccgcaatcgctga
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