Pseudomonas nunensis: NK667_31715
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Entry
NK667_31715 CDS
T08997
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pnb
Pseudomonas nunensis
Brite
KEGG Orthology (KO) [BR:
pnb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnb03019
]
NK667_31715 (hrpB)
Enzymes [BR:
pnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NK667_31715 (hrpB)
Messenger RNA biogenesis [BR:
pnb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NK667_31715 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
AAA_30
AAA_22
Flavi_DEAD
Cas3-like_C_2
HA2_N
Motif
Other DBs
NCBI-ProteinID:
UTO14647
LinkDB
All DBs
Position
7159583..7162102
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AA seq
839 aa
AA seq
DB search
MIFLPIDEVLPALREALATRHEAVLEAPPGAGKTTRVPLALLHEPWLAGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDGVGL
LIFDEFHERSLDADLALALSLNGRELFRDDQPLKILLMSATLEGKRLAGLLDDAPILRSE
GRMYPVAMRWGRPFQPGEFIEPRVVQIILEALNDETGSVLVFLPGQAEIRRVYQQLVDAL
GQSTQVLLCPLHGELDLAAQRAAIDPAPVGKRKVVLATNIAETSLTIDGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSQDQHEQLAAYASAEILS
ADLAGLALQLGRWGVTPGQLVWLDVPPAAAYAQAQDLLERLGALDGEALTRHGLAMAELP
AHPRIAHLLLRGQALGLADMACNVAALLGERDILRGAGADLHTRLVLLSGEERAARGAQG
GVQRARQLARQFRGYLRGKASEPVSDPDHPRWLGALLALAYPDRVAQQRRAGGAEYRLAN
GRAALFTEADSLMKQPWLVIADLGSRQGQREERIYLAADFDPALFDSVLAEQVRNVDQLD
WDEREGVLRAERQRKVGELILSREPLTGLDETARSQALVNLVRRKGLELLPWTPELRQWQ
ARVALLRQLDLGAKGESEWPDVSDAALLENLEHWLMPYLGKVSRLSHFANLDLSSIVHNQ
LPWPLPQRLDELAPHHLSVPSGSSIRLDYSEQPPILAVRLQELFGLAETPRIAGGRQVVK
LHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARIKPRKP
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgatttttttgccgattgatgaagttttacccgccctgcgtgaagccttggcgacacgc
cacgaagccgtgctcgaagcaccgcccggcgccggtaaaactacccgcgtgccgctggct
ttgctccacgagccgtggctggccgggcaaacgattctgatgctcgaacctcgtcgcctg
gcggcgcgggcagcggcggagcgtttggccagtgagctgggcgagaaggtcggggaaacc
gtcggctatcgcattcgcctggacagcaaagtcggacccaacacccgcatcgaagtggtc
accgaaggcattctcacccggcgcttgcaggatgatccggcgctggacggcgtggggttg
ctgatctttgacgaattccacgaacgcagcctcgacgccgatctggcgttggccctgagc
ctgaatggccgggagctgtttcgcgacgatcagccactgaaaatcctgttgatgtcggcc
accctggaaggcaagcgcctggccgggttgctggatgacgcgccgatcctgcgcagtgaa
gggcgcatgtacccggtggcgatgcgctgggggcggccgttccagcccggtgagtttatt
gagccgcgggtggtgcaaatcatcctcgaagctctgaatgatgagacgggcagtgtgctg
gtgttcctgccggggcaggcagaaatccgtcgcgtgtatcaacagttggttgatgcgctg
ggccagagcacgcaggttttgctttgccccttgcacggcgaactcgatctggccgcccag
cgcgccgcgatcgatccggcgcctgtcggtaaacgcaaagtggtgctggccaccaacatc
gccgaaaccagcctgaccatcgacggcgtgcgggtggtgatcgacgccgggttggcgcgg
gtcccacgttttgaccccggcagcggcatgactcgcctcgacacccaacgcatctcccgc
gccagcgccacgcaacgcgcaggccgggccgggcgactggagccgggtgtgtgttatcgg
ttgtggtcgcaggatcagcacgaacaactggcggcgtacgccagtgcggaaatcctttcg
gcggacctcgccgggctggcgttgcagcttgggcgctggggtgtgacaccgggccaactg
gtgtggctcgacgtgccgcccgccgccgcttatgcacaggctcaggatttgctcgaacgc
ctcggcgctctggacggcgaagcgctgacccgtcacggcctggccatggccgaactgccg
gcgcatccacgcatcgcgcatttgctgttgcgcggtcaggcattagggctggcggacatg
gcttgcaacgtcgcggcactgctgggcgagcgagacattttgcgcggcgccggcgccgat
ctgcacactcgattggtcctgttgtccggcgaagagcgcgccgctcgcggtgcccagggc
ggtgtgcaacgggcgcgtcaattggcgcggcagtttcgcggctacttgcgcggcaaagcc
tcggagccggtcagcgatccggatcatccgcgctggctcggcgcgctgctggcgttggcc
tatccggatcgggtcgcgcaacagcgccgggccggtggcgcggaatatcgtctggccaac
ggtcgggcggcgttgtttaccgaagccgacagtttgatgaagcaaccctggctggtgatc
gccgatctcggcagtcgccagggccaacgcgaagaacggatttacctggcggcggatttc
gatccggcgctgttcgattcagtcttggccgagcaggtgcgcaacgtcgatcaactggat
tgggacgagcgcgaaggcgtgttgcgggccgagcggcagcgcaaggtgggcgaactgatc
ctcagccgcgaacccttgaccgggctcgacgaaaccgcgcgcagccaggcgctggtgaat
ctggtgcggcgcaaaggcctggagctgctgccgtggaccccggagctgcgtcagtggcag
gcgcgggtggcgttgttgcgccagttggacctgggcgccaaaggtgaaagtgaatggccg
gatgtcagcgacgccgcgctgcttgaaaacctcgaacactggttgatgccgtacctgggc
aaagtctcgcgactcagccacttcgccaatctggacctgtcgagcatcgtgcataaccag
ttgccgtggccattgccgcaacggctcgatgaactggcgccgcaccatttgagcgtgccg
tccgggtcatcgattcggctggattacagcgagcaaccgccgattctggcagtgcgttta
caagagctgtttggcctggccgaaaccccgcgtatcgctggtggccggcaagtggtcaag
ctgcacctactgtccccggcccggcgcccggtgcaggtgactcaggatctggccaacttc
tggcgcagcacctatgccgaggtgaagaaggatttgaaggggcgctatccgaagcattac
tggccggatgatccgttggtggctgaggcgacggcgcggatcaagccgcgcaagccctga
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