Pseudomonas aeruginosa NCGM2.S1: NCGM2_3946
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Entry
NCGM2_3946 CDS
T01974
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pnc
Pseudomonas aeruginosa NCGM2.S1
Pathway
pnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCGM2_3946 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnc03019
]
NCGM2_3946 (deaD)
03009 Ribosome biogenesis [BR:
pnc03009
]
NCGM2_3946 (deaD)
Enzymes [BR:
pnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCGM2_3946 (deaD)
Messenger RNA biogenesis [BR:
pnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCGM2_3946 (deaD)
Ribosome biogenesis [BR:
pnc03009
]
Prokaryotic type
rRNA helicases
NCGM2_3946 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAK90784
LinkDB
All DBs
Position
1:complement(4274155..4275825)
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AA seq
556 aa
AA seq
DB search
MTQETVGFAALGIHPNVLAAIVAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAF
ALPLLSRIDPSRREPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLK
ALRQGAQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPES
RQTVLFSATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLL
EVEQFDALIAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVI
ATDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVGEVRLPDAETVLEARLARLAASLTPLLDSAVEQRGAVRDELCRRLGCDAETL
AAALLARLTAGKALDLESVRREQPLTPSAPRERADRGERGERPERSGERRPMAPPSEGRA
RCRTALGARDGVAAKNLLGAILNEGGLSREDIGRIQIRDTFSLIELPEANLERLLTKLKD
TRVAGKALRLRRYRED
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgactcaggaaaccgtcggcttcgccgcgctcggtattcaccccaatgtgctcgcggca
atcgtcgccgtaggctacgaagagccttcgcctatccaggctcaatcgattccgctgatc
ctcgaaggccacgacatgatcggccaggcgcagaccggtaccggcaagaccgccgcgttc
gccctgccgctgctgtcgcgcatcgacccgagccgtcgcgagccgcagatgctggtgctg
gtgccgacccgcgagctggccctgcaggtcgccaccgcctgcgaaacctattccaagcaa
ttgccgggcgtcggcgtggtcgccgtctacggcggcgcgcccatggggccgcagctgaag
gccctgcgccagggcgcacagatcctcgtcgctacccccggccgcctgtgcgaccacctg
cgccgcgacgagaagctgctggccaccgtccagcgcctggtgctcgacgaagccgacgag
atgctcaagctcggcttcatggacgacctggaagtgatcttcgaggcgcttcccgaatcg
cgccagaccgtgctcttctcggcgaccctgccggcgtccatccgtggcatcgccgagcgc
cacctgaagcagcccaagcacgtcaagatcgccgccaagacccagaccgtggcgcgcatc
gagcaggtccacctgatggtccatgccgaccagaaggccggttcgatccagcgtctgctg
gaagtcgagcagttcgacgcgctgatcgccttcgtccgcaccaagcaggccaccctcgac
tacgccgaattgctcgagcgccagggctaccgcgccgccgcgctcaacggcgacatgccg
caggcccagcgcgagcgggtcatcgagtcgctgaaggacggttcgctggacatcgtcatc
gccaccgacgttgctgcccggggcctggacgtaccgcgcatcacccacgtgctgaacatc
gacatgccctacgaccccgagtcctacgtgcaccgcatcggccgtaccggccgtgccggt
cgggaagggcgcgcgctgttgctggtgactccgcgcgagcggcgcatgctgcaggtgatc
gagcgggtcaccgggcagaaggtcggcgaagtccgcctgccggatgccgagaccgtactg
gaggcccgcctggcgcgcctggccgcgagcctgacgcccttgctcgacagcgccgtcgag
cagcgcggcgcggtgcgcgacgagctgtgccgtcgcctcggctgcgatgccgagaccctg
gccgctgcactgctggcgcgcctgaccgccggcaaggcgctggacctggagtcggtgcgc
cgcgaacagccgctgaccccatcggcaccgcgcgagcgtgccgaccgtggcgaacgcggc
gagcgtccggagcgcagcggcgagcgtcgtccgatggcgccgccgagcgaaggccgtgcc
cgctgccgcaccgccctcggcgcgcgcgacggggtcgcagcgaagaacctgctgggcgcg
atcctcaacgagggcggcctgtcccgcgaggacatcggtcgcatccagattcgcgatacc
ttcagcctgatcgaactgcccgaggccaacctcgagcgcctgctgaccaagctcaaggac
acccgcgtcgccggcaaggccctgcgcctgcgccgctatcgcgaggactga
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