Pseudomonas aeruginosa NCGM2.S1: NCGM2_4605
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Entry
NCGM2_4605 CDS
T01974
Symbol
srmB
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pnc
Pseudomonas aeruginosa NCGM2.S1
Brite
KEGG Orthology (KO) [BR:
pnc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pnc03009
]
NCGM2_4605 (srmB)
Enzymes [BR:
pnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCGM2_4605 (srmB)
Ribosome biogenesis [BR:
pnc03009
]
Prokaryotic type
rRNA helicases
NCGM2_4605 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BAK91428
LinkDB
All DBs
Position
1:complement(4959327..4960652)
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AA seq
441 aa
AA seq
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MFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLH
RLLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRK
NPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTL
LFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWLLSN
ETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVAT
DVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVER
YLKQNFERRNIKELKAAYQGPKKLKASGKAAGSKKKKQDRKGAAAKPAAKRKPAARPKAG
PSAVVSADGMAPLKRKKPTVE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
ttgttcagccaatttcccctccacgaacgcctgctgaaggcactggaaagcctgtccttc
agcgagccgacgccggtccaggccgcggccattcccaaggcgctggaggggcacgacctg
cgggtcacggcacagaccggcagcggcaagaccgcggccttcctgctgccgctgctgcac
cgcctgctggccgaggacaagccgcgctccctggcgcgcgcgctgatcctcctgccgacc
cgcgagctggcccagcagaccctcaaggaagtcgagcgcttcgcccagttcaccttcatc
aaggcctgcctgatcactggcggcgaggacttcaaggtgcagggcgcgcgcctgcgcaag
aacccggagatcatcatcggcacccccggccgcctgctcgagcagcgcaacgccggcaac
ctgccgttgcaggacatcgaggtgctggtgctggacgaggccgaccgcatgctcgacatg
ggcttcgccgacgacgtgctggccctggccaacgcctgcccggccgagcgccagaccctg
ctgttctccgccacccacagcggcgccgggttgaacaaggtgatcgccgaggtgctgcgc
gagccgcaagtgctgcgcctgaaccaggtcggcgagctgaacgagaacgtccgccagcag
gtcatcaccgccgacgacgtggcgcacaaggaacagttgctgcaatggctgctgagcaac
gagacctacaccaaggccatcgtcttcaccaacacccgggtctccgccgatcgcctgacc
gggcggctgatcgccaaccagcacaaggtcttcgtcctgcatggcgagaaggaccagaag
gaccgcaagctggccatcgagcgcctgaagcagggcgcggtgaagatcctcgtcgccacc
gacgtcgccgcacgcggcctggacgtcgaaggcctggacctggtgatcaacttcgacatg
ccgcgcagcggcgacgagtacgtgcaccgcatcggccgcaccggtcgcgccggcgccgag
ggcctggcgatctcgctgatctgccatggcgactggaacctgatgtcgagcgtcgaacgc
tacctcaagcagaacttcgaacgacgcaacatcaaggaactgaaggccgcctaccagggg
ccgaagaaactcaaggcgtcgggcaaggccgccggcagcaagaagaaaaagcaggacagg
aagggcgccgccgccaagcccgcggccaagcgcaagcccgccgcgcggccgaaggccggg
ccgtcggcggtggtcagcgccgacggcatggcgccgctcaagcgcaagaagccgacggtg
gagtga
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