Pirellulimonas nuda: Pla175_00040
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Entry
Pla175_00040 CDS
T06953
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
pnd
Pirellulimonas nuda
Brite
KEGG Orthology (KO) [BR:
pnd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnd03032
]
Pla175_00040 (gyrB)
03400 DNA repair and recombination proteins [BR:
pnd03400
]
Pla175_00040 (gyrB)
Enzymes [BR:
pnd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Pla175_00040 (gyrB)
DNA replication proteins [BR:
pnd03032
]
Prokaryotic type
DNA Topoisomerases
Pla175_00040 (gyrB)
DNA repair and recombination proteins [BR:
pnd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Pla175_00040 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
QDU86654
UniProt:
A0A518D5B1
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All DBs
Position
3179..5758
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AA seq
859 aa
AA seq
DB search
MADEQQDKPQSDNPSEESSDLSPPEGTSNDYGSDQMRYMSDLEHVRERTGMYIGNRDTRG
MHHLVTEVVDNSIDEVMNGYANRVAVTVNVDGSITVEDDGRGIPVDIHPALSAQVGKEIS
TLEGVMTILKFGGKFDNKAYKTSGGLHGIGVKAVNFLSEWLEVYVRRDGHAYQHEYERGL
PQGPVRRIGKAEGSGTRTTFKPDPQMFGDLKFDYNTLHRRLKELAYLNKGVRILFKDERS
GQGEDFCYTRGIVEYVEHLNRSSEPIHPEVVHVWGEFENCEIDVAFQYSGEFTENVHCYV
NNINTHDGGTHLSGFRSALTRTLNNYGKRENLFKDLVPSGEDFREGLTAVVSVRIPEPQF
ESQTKVKLNNPELEGIVTSAVGEYLGKYLEENPKVAKAIVNKAILAVEAREAARKAKQLM
RERKGALAGGGLPGKLRDCSSKEVDKCELYLVEGDSAGGSAEGGRLREFQAILPLRGKII
NAYKSREDKVLDNAEVRAMIAAVGIGIGEDQDLSKRRYGRVIIMTDADVDGSHIRTLLLT
FFYRQMYDLVARGHVYVAQPPLFRVRKGKKVEYIQTEEEMRKQLLEGGLGESVFEPGDGR
RIEGDEMAKLVHTLATMEDSLVALERRGVSLKVHAERQDPATGKLPIFHVFVGYDEHWFT
TRDQLDAFVKAKEEELGGELTVESGPVVPANTTDAEPAEANGDDSASPLAAPTDISRRLR
ILELHEVRTINTLLSDLSKMGFEIDTLIPQERTGEEGSRYTIRRGENEVGLEDLRRLPAA
IRAAGEKGLQITRFKGLGEMNAEELRDTTLDPTNRTLLRVRMDDAAAADDLFRILMGDQV
EPRRDFIQTHALDVKNLDV
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgagcagcaagacaagccccaatccgataacccgtctgaagagtcgtccgac
ctctccccccccgaggggacctcgaacgactacggcagcgaccagatgcgctacatgagc
gacctggagcacgtccgcgaacggaccggcatgtacatcggcaaccgcgacacccgcggc
atgcaccacctggtgaccgaggtggtcgacaactccatcgacgaggtgatgaacggctac
gccaaccgcgtggcggtgaccgtgaacgtcgacggctccatcaccgtcgaggacgacggc
cgcggcatccccgtcgacatccaccccgcgctctccgcgcaggtgggcaaggagatctcc
accctggaaggggtgatgaccatcctcaagttcggcggcaagttcgacaacaaggcgtac
aagacctccggcggcctgcacggcatcggcgtcaaggccgtgaacttcctctccgagtgg
ctggaggtgtacgtccgccgcgacggccacgcctaccagcacgagtacgagcgcggcctg
ccccagggccccgtgcgccgcatcggcaaggccgagggctccggcacgcgcaccaccttc
aagcccgacccgcaaatgttcggcgacttgaagttcgactacaacacgctccaccgccgc
ctgaaggagctggcctacctcaataagggcgtccggatcctgtttaaggacgagcgcagc
gggcagggggaagacttctgctacacgcgcggcatcgttgagtacgtcgagcacctcaac
cgctccagcgagcccatccaccccgaggtggtgcacgtgtggggcgagtttgagaactgc
gagatcgacgtcgcgttccagtactccggtgagttcaccgagaacgtccactgctacgtg
aacaacatcaacacccacgacggcggcacccacctctccgggttccgctccgcgctcacg
cggacgctcaacaactacggcaagcgcgagaacctgttcaaggacctggtccccagcggc
gaagacttccgcgaggggctcaccgcggtcgtcagcgtccgcatccccgagccgcagttc
gagtcgcagaccaaggtcaagctcaacaaccccgagctcgaagggatcgtcacctcggct
gtcggcgagtacctgggcaagtacctggaagagaaccccaaggtcgccaaggcgatcgtc
aacaaggcgatcctggccgtcgaggcccgcgaggccgcacgcaaggccaagcagctcatg
cgcgagcgcaagggcgcgctggccggcggcgggctgccgggcaaactgcgcgactgctcc
agcaaagaggtcgacaagtgcgagctctacctggtggaaggcgactcggccggcggctcg
gccgaggggggccggctccgcgagttccaggccatcctgccgctgcggggcaagatcatc
aacgcctacaagtcgcgcgaagacaaggtgctggataacgccgaagtgcgggccatgatc
gccgcggtgggcatcggcatcggcgaggaccaagacctctccaaacgccgctacggacgc
gtcatcatcatgaccgacgccgacgtcgacggctcgcacatccgcacgctgctgctgacc
ttcttctaccgccagatgtacgacctggtggcccgcggccacgtgtacgtcgcccagccc
ccgctgttccgcgtgcgcaagggcaagaaggttgagtacatccagaccgaagaagagatg
cgcaagcagctgctggagggcggcctgggcgagagcgtcttcgagccgggcgacggacgc
cggatcgagggggacgagatggccaagctggtccacacgctggccaccatggaagactcg
ctggtggcgctcgaacgccgcggcgtgagcctcaaggtgcacgcagagcggcaggacccc
gccaccggcaagctccccatcttccacgtgtttgtcggctacgacgagcactggttcacc
acccgcgaccagctcgacgcgttcgtcaaagccaaggaagaagagctcggcggcgagctc
accgtcgagtcgggccccgtggtccccgccaacaccaccgacgccgaacccgccgaggcc
aacggcgacgactccgccagcccgctggccgcccccaccgacatcagccgccggctgcgg
atcctcgagctgcacgaggtgcggaccatcaacacgctgctctcggacctatcgaagatg
ggcttcgagatcgacacgctgatcccgcaagaacgcaccggcgaagaagggagccggtac
accatccgccgcggcgagaacgaggtcggcctcgaagacctccgccgcctgccggccgcg
atccgcgccgccggcgagaagggcctacagatcacccgctttaagggcctgggtgaaatg
aacgccgaagaactccgcgacaccaccctcgaccccaccaaccgcacgctcctacgcgtg
cggatggacgacgccgccgcggcggacgacctgttccgcatcctgatgggcgaccaggtg
gagcccaggcgggactttattcagacgcatgcgttggatgtgaagaatttggatgtgtga
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