Pirellulimonas nuda: Pla175_02750
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Entry
Pla175_02750 CDS
T06953
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pnd
Pirellulimonas nuda
Pathway
pnd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pla175_02750 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnd03019
]
Pla175_02750 (cshA)
03009 Ribosome biogenesis [BR:
pnd03009
]
Pla175_02750 (cshA)
Enzymes [BR:
pnd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pla175_02750 (cshA)
Messenger RNA biogenesis [BR:
pnd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pla175_02750 (cshA)
Ribosome biogenesis [BR:
pnd03009
]
Prokaryotic type
rRNA helicases
Pla175_02750 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QDU86921
UniProt:
A0A518D615
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All DBs
Position
complement(360867..362258)
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AA seq
463 aa
AA seq
DB search
MTENEELQSPPAEPSADDNGQPAPESPSATFQGMGLSDTMLASLKNACYDTPSPVQAGVI
PVALQGKDVLGQARTGTGKTASFGIPILEMLADNGRGAPPQALVLAPTRELAVQVRDEID
KLAHGRKVRTLAVYGGKPIKGQVDKLQRGAEIVVGTPGRVLDLLARGFLVLEQLRCVVLD
EADRMLDIGFRPDIEKILRKCPRQRQTLLLSATLAPGVQRLARQYMIEPTMLDFSPKTAT
VDTIEQFYFTVDERKKFELLVRLLKRDDPAQAIIFTRTKRGADKVYTKLTGKVKSVDCIH
GDLNQSQRDRVMRKFRADEVTLLVATDVVGRGIDVSNISHIVNYDMPQSSDDYVHRVGRT
GRMGRDGVAYTFVTPEQGGELTRIEMLINKELTRDQIEGFEAAAPVAQKATEQRQARFFG
IKGESQAPPAPAEPAAPVEPAEPEPPKPAPFGKRPRKRHRKAL
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaacgaggaattgcaatccccccccgccgagccttcggcggatgacaacggc
cagcccgcccccgagtcgcctagcgcgacgttccaggggatgggtctttccgacaccatg
ctggcgtcgctcaagaacgcctgctacgacaccccgtcgccggtccaggccggggtgatc
ccggtcgctttgcagggcaaagacgtgctcggccaggcccgcaccggcaccggcaagacg
gcgtcgttcggcatccccatccttgagatgctcgccgacaacggccgcggcgccccgccc
caagccctggtgctggcgcccacccgcgagctggccgtgcaggtgcgcgacgagatcgac
aagctggcccacggccgcaaggtgcgcacgctggccgtgtacggcggcaagccgatcaag
gggcaggtcgacaagctgcagcgcggcgccgagatcgtggtcggcaccccgggccgtgtg
ctcgacctgctcgcccgcggcttcctggtgctggagcagctccgctgcgtcgtgctggac
gaggcggaccggatgctcgacatcggtttccgccccgacatcgagaagatcctccgcaag
tgcccccgccagcggcagaccctgctgctctcggccacgctggcgcccggcgtccagcgg
ctggcgcggcagtacatgatcgagccgacgatgctcgacttcagccccaagaccgccacg
gtcgacacgatcgagcagttctacttcaccgtcgacgagcggaagaagttcgagctgctg
gtccgcctgctcaagcgggacgaccccgcccaggcgatcatcttcacccgcaccaagcgg
ggcgccgacaaggtctacaccaagctcaccggcaaggtgaagtcggtcgactgcatccac
ggcgacctgaaccagagccagcgcgaccgcgtgatgcgcaagttccgggccgacgaggtc
accctgctggtggcgaccgacgtcgtgggccgcggcatcgacgtgagcaacatcagccac
atcgtcaactacgacatgccccagagctccgacgactacgtccaccgcgtgggacgcacc
gggcggatggggcgtgacggggtcgcctacacgttcgtgacccccgagcagggcggcgag
ctgacgcggatcgagatgctcatcaacaaggagctgacccgcgaccagatcgagggcttc
gaggccgcggcgcccgtggcgcagaaggccaccgagcagcggcaggcgcgtttcttcggg
atcaaaggagaatcgcaggcgccccccgctccggcggaacccgccgcgcccgtggagccc
gccgagccagaacccccgaaacccgccccgttcggcaagcgtcctaggaagcgccaccgc
aaggcgctttag
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