Pirellulimonas nuda: Pla175_08540
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Entry
Pla175_08540 CDS
T06953
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pnd
Pirellulimonas nuda
Pathway
pnd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pla175_08540 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnd03019
]
Pla175_08540 (rnr)
03016 Transfer RNA biogenesis [BR:
pnd03016
]
Pla175_08540 (rnr)
Enzymes [BR:
pnd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pla175_08540 (rnr)
Messenger RNA biogenesis [BR:
pnd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pla175_08540 (rnr)
Transfer RNA biogenesis [BR:
pnd03016
]
Prokaryotic type
tRNA degradation factors
Pla175_08540 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
QDU87492
UniProt:
A0A518D7N0
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All DBs
Position
997130..999586
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AA seq
818 aa
AA seq
DB search
MDQDIRNAVLAYTGSAAYKPVKPKVIGERLGLAGDALELARKTIKKMIKAGDLEYGPNHM
VLPMQPGHAAREGIAAALKPGVPKVDGAPSATDKQPGTRAASGAKSVVGTFRRIGSGDGF
VRPEGTPAATGRDSDVYVNKKNAGDAASGDIVRIRMDKRTGYKGKPEGKVIDVVERQTNT
FVGTYLEEGGQGLVMVDGGVFTAPIYVGDPGAKGANPEDKVAIEMVRFPSHMREGEGVIT
QRLGASGAPGVDTMAIKIEFALPGEFPPEVLEDARGQAERFDESIPKTRTDLTGEVVATI
DPVDARDFDDAISLRRIEGGHWELGVHIADVSHFVQPKTALDSEAYDRATSVYLPDEVIP
MLPEIISNNLASLQPDKVRYAMTCRIEFTPEGVPVGADVFKSAIKSRRRFTYEEIDAYLA
ETGLVKASKSSPPRQGEGAAPGKTPTKANAKRATNPLPNPPPAGEGVKATLTPEVDALVA
DMFELAMMLRRRRLERGALELNMPEIKVDLDKDGRVSGAHLETQTESHQIIEEFMLAANE
AVARNLRDAGLLFLRRVHGAPDPKKMAALTAFVRDLGFQVESLENRFELQKLLGEAHGDP
REPALNFAALRSMQRAIYSPEEEGHYALASDCYCHFTSPIRRYPDLTVHRLLEALAIGKK
PVQDEAALFAEGDHCSDREHRAASAERELTKVKLLNYLKDKIGLEMNGVITGVESFGMFI
QGDKLPAEGMVHISALTDDYYKFDRASHSITGFRGGNSFRLGDPVRVAVASVDVDGRKLD
FRLLGRGEGKRAPKPKKTSGRPPKGRSDKTGKHRRKKG
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggaccaagacatccgcaacgccgtgctcgcctacacgggaagcgccgcctacaagccg
gtcaagccgaaggtgatcggtgagcggctcggcctggcgggcgacgcgctcgagctggcg
cgcaagaccatcaagaagatgatcaaggcgggcgatctggagtacggcccaaaccacatg
gtgctgccgatgcagccaggccacgcggcccgcgaggggatcgccgccgcgctcaagccg
ggcgtgcccaaggtagacggcgcgccgtcggcaaccgacaagcagcccggcacccgggcg
gcctcgggcgccaagagcgtggtcggcaccttccggcggatcggctcgggggacggcttt
gtacgccccgaggggacccccgccgccaccggacgcgactccgacgtgtacgtgaacaag
aagaacgccggcgacgccgccagcggcgacattgtccgcatccgcatggacaagcggacc
ggctacaaggggaagccggaagggaaggtcatcgacgtcgtcgagcggcagaccaacacc
ttcgtcggcacctatctcgaagagggggggcaggggctggtgatggtcgacggcggcgtg
ttcaccgcgcccatctacgtcggcgaccccggcgccaagggcgccaaccccgaagacaaa
gtcgccatcgagatggtccgcttcccgtcgcacatgcgcgaaggggagggggtcatcacc
cagcggctcggggccagcggcgcgccgggggtcgacaccatggccatcaagatcgagttt
gcgctccccggggagttcccacccgaggtgctggaagacgcccgcggccaggccgagcgc
ttcgacgagtcgatccccaagacccgcaccgacctgaccggcgaggtggtggccaccatc
gacccggtagacgctcgtgactttgacgacgcgatctcgctccgccggatcgaagggggc
cactgggagttgggggtgcacatcgcggacgtgtcgcacttcgtgcagcccaagacggcg
ctggacagcgaggcgtacgaccgcgccaccagcgtctacctgcccgacgaggtgatcccg
atgctgccggagatcatctcgaacaacttggcgagcctgcagccagacaaggtgcgctac
gcgatgacctgccggatcgagttcacgcccgaaggcgtgccggtgggcgccgacgtgttc
aagagcgcgatcaagagccggcgcaggttcacctacgaagagatcgacgcgtacctggct
gagacaggtttggtcaaggcgagcaaaagctcccctcctcggcagggggagggggcagcc
ccggggaaaaccccaaccaaggcaaacgctaagcgagccaccaaccccctccccaaccct
ccccctgccggggagggagtaaaggcgacgctcacccccgaggtcgatgcgctcgtcgcc
gacatgttcgagctggcgatgatgctccgccgccgccggctggagcggggcgccctcgag
ctgaacatgccggagatcaaggtcgacctcgacaaggacgggcgggtctccggcgcgcac
ctcgagacgcagaccgagagccaccagatcatcgaggagttcatgctggccgccaacgag
gcggtggcgcggaacctacgcgacgcggggctgctgttcctacgccgcgtgcacggcgcc
cccgacccgaagaagatggcggccctgaccgcgtttgtccgcgacctgggcttccaggtc
gagagcctggagaaccgcttcgaactgcagaagctgctgggcgaagcgcacggcgacccg
cgcgagcccgcgctcaatttcgcggcgctgcggtcgatgcagcgggccatctacagcccc
gaagaagaggggcactacgccctggcgagcgactgctactgccacttcacctcgccgatc
cgccgctaccccgacttgacggtccaccggctgctcgaggcgctcgcgatcggcaagaag
ccggtgcaggacgaggcggcgctgttcgccgagggagaccactgcagcgaccgcgagcac
cgggccgccagcgccgagcgcgagctaaccaaggtgaagctgctgaactacctgaaagac
aagatcggcctggagatgaacggcgtcatcaccggcgtcgagagcttcggcatgttcatc
cagggagacaagctgccggccgaggggatggtgcacatttcggccctgacggacgactac
tacaagttcgaccgcgccagccactcaattaccggcttccgcggcggcaacagcttccgc
ctgggcgaccccgtgcgggtggccgtggcgagcgtcgacgtcgacggccgcaagctcgac
ttccgcctgctgggccgcggcgagggcaaacgggcgcccaaaccgaagaagacctccggc
cgtccccccaaaggccgcagcgacaagacgggcaaacaccggcgcaaaaagggctag
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