Pirellulimonas nuda: Pla175_12860
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Entry
Pla175_12860 CDS
T06953
Name
(GenBank) type I restriction enzyme EcoKI subunit R
KO
K19789
DNA repair protein RadD
Organism
pnd
Pirellulimonas nuda
Brite
KEGG Orthology (KO) [BR:
pnd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnd03400
]
Pla175_12860
DNA repair and recombination proteins [BR:
pnd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
Pla175_12860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
UPF0547
SWI2_SNF2
AAA_30
SLFN-g3_helicase
Glyco_tran_WecG
zf_UBZ
DZR
Flavi_DEAD
AAA_22
Zn_ribbon_15
Zn_Ribbon_1
Helicase_RecD
Trm112p
Zn_ribbon_DUF2089
Motif
Other DBs
NCBI-ProteinID:
QDU87919
UniProt:
A0A518D8W0
LinkDB
All DBs
Position
1505545..1507212
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AA seq
555 aa
AA seq
DB search
MVNLRPYQRAAVLAVYLFWRTKLGSPAVVMPTGSGKTVVIAQLSSDAATRWGGRVLILSH
SREIVKQIVNKLRTAFPGLDVGVHAAGLKRHDTQNQIVVAQIQTAHGRACELGAFDVVII
DECHTVSTKNKGRYRKLLADLMVINPNTRVVGFTATPFRLDSGPICTPDGVFSEVCYEVS
VAELMRDGYLSPITTKSGCLQPDLSGVRIRGRDYDQQQLGHAMDQEAPVIAACEELVDST
AARSATLIFATSVPHARRIVETLQQEHGLACGFICGATPTAERDATLARFAAGELRFLCN
VGVLTTGYDAPHIDCVVLLRPTMSCGLYVQMVGRGFRLHPGKEDCLVLDFGGNVDRHGPI
DALRIKTERAGEGAGESIVKTCPECQGQIAVGFLTCPQCGHAFPPPKRQTHRAQATSAPI
LSMSITNTVYRVADVCYSVHHGRRAAEGAPPTMRVEYAIGRLVWQSEWVCIEHDGYARQK
AELWWRARTDLPVPDSVAEAVEIAESGVLATPSAITVCEVEGDQFPKIVAYDFATRSEPQ
TAASAALSQEGAADA
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggtcaatctccgaccgtaccagcgcgcggccgtgctcgccgtctaccttttctggcgc
acgaagctcggcagtcccgccgtcgtcatgccgaccggctcgggcaagacggtcgtcatc
gcccaactaagctccgacgcggctacccgttggggcggccgcgtgctgattctgtcgcac
agccgtgagattgtgaagcagatcgtcaataagctccgcacggcgttcccaggcctcgac
gtgggcgtccacgccgctggcctgaagcgtcacgacacgcaaaaccaaatcgtcgtcgcc
cagattcagacagctcatgggcgggcatgcgagctaggggcgttcgacgtcgtcatcatt
gacgaatgccacacggtcagcaccaagaacaaagggcgttaccggaagttgttggccgac
ttgatggtaattaaccccaatacccgggtagtgggattcaccgcgacgccattccgcctc
gacagcggccccatctgcacgcccgatggcgttttcagcgaggtctgctacgaggtgtcg
gtagccgagttgatgcgcgacggatacctatctccgatcacaacgaaatcggggtgtctg
caacccgacctcagcggcgtgcgtatccgcggacgtgactacgaccagcagcagctcggg
cacgcgatggaccaagaggcgccggtaatcgcggcctgcgaggagcttgtcgactcgacg
gcagcccgcagcgcgacgctgatcttcgcgacatccgtgccccacgcacggcgcatcgtc
gagacgctgcagcaagagcacggcctcgcgtgcgggttcatctgcggcgcgacccccacc
gccgagcgggacgcaacgctggcccggttcgcggcgggcgagctgcggttcttgtgcaac
gtcggcgtcctcacgactggctacgacgcgccgcacatcgactgcgtcgtgctgctgcgt
ccgacgatgtcgtgcggcttgtacgtgcagatggtcggccgaggcttccgcctccacccg
ggcaaggaagattgcctggttctggatttcggcggaaacgtggatcgccacggcccgatc
gacgcgctgcggatcaaaaccgaacgcgccggcgagggggcgggagagtcgatcgtcaag
acgtgccccgagtgccagggccagatcgcggtgggcttcctgacctgcccacagtgcggc
cacgcgttcccgccgccgaagcggcagacccaccgggctcaggcgacgagcgcgccaatc
ttgtccatgtcgatcaccaacacggtctaccgggtagcagacgtgtgctacagcgtccac
cacggccgccgggccgcggagggcgcgcccccgaccatgcgggttgagtacgcgatcggc
cgactcgtgtggcaatccgagtgggtctgcattgagcacgacggttacgcacgccagaag
gcggaactgtggtggcgggcgcgcacggacctgccggtccccgactcggtggccgaggcg
gtcgagatcgccgaaagcggcgtgttggctactccgagcgctatcaccgtctgcgaggtc
gagggggatcagttcccgaagatcgtcgcctacgacttcgccacccggtccgagccgcag
acggctgctagcgccgccctctcgcaggagggcgccgccgatgcctaa
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