Pirellulimonas nuda: Pla175_20180
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Entry
Pla175_20180 CDS
T06953
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
pnd
Pirellulimonas nuda
Pathway
pnd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pla175_20180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnd03021
]
Pla175_20180
03019 Messenger RNA biogenesis [BR:
pnd03019
]
Pla175_20180
Transcription machinery [BR:
pnd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Pla175_20180
Messenger RNA biogenesis [BR:
pnd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pla175_20180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA
Spore_III_AA
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QDU88638
UniProt:
A0A518DAZ4
LinkDB
All DBs
Position
complement(2463212..2464696)
Genome browser
AA seq
494 aa
AA seq
DB search
MADTADRDSRAERSRAPLQRRRPPGAGDSSQYIDQELLRRLDREEPLSLAEELDKAAERI
RRSGAQIVKSNDLDDNIHIADLQKRPMADLMAIAEQEGVEDCSGLKKQDLIFKILKVRVK
LNGMMYGEGTLEVLPDGFGFLRSPDYHYLSCPDDIYVSPSQIRRFNLRNGSTVAGTIRPP
KENERYFALLRVENINGEDPNHVTKRVSFDDLTPIHPDDRIRLETTTDEIAMRVVDMIVP
IGFGQRGLIVSPPRAGKTILMQKMAKSVLANYPDAYVMMLLIDERPEEVTDMEREIKGKN
CEVISSTFDEAASRHVQVSEMVIEKAKRMVEAGRDVIIFLDSITRLARAWNSECPSSGKV
LSGGIDANAMQRPKRFFGSARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNQEIV
LDRALVDKRIWPAIDINRSGTRREEMLLDPEEHRRVCLLRRVLNEMNPPDAMDLLVNRLI
KTKTNAEFLMSVKD
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggccgataccgcagaccgggactcccgggccgaacgctcgcgcgcgccgctacaacgc
cgccgtccccccggcgccggcgactccagccagtacatcgatcaggagctgttgcgccgg
ctcgaccgcgaagagcccctctcgctggccgaagagctcgacaaagccgccgagcgcatc
cgtcgctccggcgcccagatcgtcaagagcaacgacctcgacgacaacatccacatcgcc
gacctacagaagcggccgatggccgacctgatggcgatcgccgagcaggaaggggtcgag
gactgctccggcctgaagaagcaggacctgatcttcaagatcctcaaggtccgcgtgaag
ctcaacggcatgatgtacggcgaggggaccctcgaagtgctgccggacggctttggcttc
ctccgcagcccagactaccactacctatcttgcccggacgacatctacgtctccccgagc
cagatccgccggttcaacctccgcaacggcagcaccgtggcgggcaccatccgtccgccg
aaggaaaacgaacgctacttcgcgctgctgcgggtcgagaacatcaacggcgaagacccc
aaccatgtgaccaagcgggtctccttcgacgacctcacccccatccacccggacgaccgg
atccgcctggagacgaccaccgacgagatcgcgatgcgggtggtcgacatgatcgtgccg
atcggcttcggccaacgcggcttgatcgtcagccctccgcgggccggcaagaccatcctg
atgcagaagatggccaagagcgtgctggccaactaccccgacgcctacgtgatgatgctg
ctgatcgacgagcggcccgaagaagtcacggacatggagcgggagatcaagggcaagaac
tgcgaggtgatctccagcaccttcgacgaggcggcctcgcggcacgtgcaggtctcggag
atggtgatcgagaaggccaagcggatggtcgaggcggggcgcgacgtcatcatcttcctc
gactcgatcacccggctggcccgggcctggaacagcgagtgcccctccagcgggaaggtg
ctctcgggcggcatcgacgcgaacgcgatgcagcgccccaagcgtttcttcggctccgcc
cgcaaggtagaagaagggggatcgctgacgattatcgcgaccgccctggtagacaccggc
agccggatggacgaggtgatctttgaggagttcaagggcaccggcaaccaggagatcgtg
ctcgaccgggcgctggtcgacaagcggatctggcccgcgatcgacatcaaccgctccggc
actaggcgggaagagatgctgctcgacccggaggagcaccgccgcgtctgcctgttgcgg
cgggtgctgaacgagatgaacccccccgacgcgatggacctgctggtgaaccggctcatc
aagaccaagaccaacgctgagttcctgatgagcgtcaaagactaa
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