Pirellulimonas nuda: Pla175_41510
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Entry
Pla175_41510 CDS
T06953
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pnd
Pirellulimonas nuda
Pathway
pnd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pla175_41510 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnd03019
]
Pla175_41510 (rhlE_1)
Enzymes [BR:
pnd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pla175_41510 (rhlE_1)
Messenger RNA biogenesis [BR:
pnd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pla175_41510 (rhlE_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
RecO_N
Motif
Other DBs
NCBI-ProteinID:
QDU90740
UniProt:
A0A518DGY2
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All DBs
Position
5246594..5248081
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AA seq
495 aa
AA seq
DB search
MTQVAPTGTAHSGAPLSTTKFSELGLADPFLKAAAAEGYEVATPIQAKAIPVVLEGRDLI
GCAQTGTGKTAAFTLPMLDRLMQNRPAHQPAAAPPQRHPQDTRRVKGDNPNPRPIRALVL
SPTRELAAQIGDSLAKYGKFTPLRQTVVFGGVSQHSQTKALRHGVDALVATPGRLLDLMD
QGFIDLSKIEVLVFDEADQMLDMGFLPALKRIVAAVPKRRQTLMFSATMPDEIRKLAQQW
LTNPESLEMGVVARPAERIAQSVHLVDAKKKPDLLTRFLKETARSRTLVFSRTKHGADKI
VKRLTQEGLHAAAIHGNKSQGARTRTLAQFKGKNPPVLVATDLAARGLDVDDISHVVNYD
LPDTPETYVHRIGRTARAGAEGIAVSFCAGDERGLLRQIERLTNLTISVEPTIDGFEPTD
PISHVSPNARGRQNAGKGGGGPRRFGAKPGGGSGYAGARTSGSGGGSYGKKKAAGGVSPA
GMASKRRPRRRPTAG
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaagttgcccccaccgggacggcccattccggcgcccccctttccaccaccaag
ttctccgagctcggcctggccgacccgttcctcaaggccgccgcggccgagggttacgag
gtcgccacgccgatccaggccaaggcgatcccggtcgtgctcgaaggacgcgacctgatc
ggctgcgcccagaccggcaccggcaagaccgcggcgttcacgctgccgatgctcgaccgg
ctgatgcagaaccgccccgcccaccagccggcggccgcccccccgcaacgccacccccaa
gacactcgccgagtgaagggtgacaaccccaacccgcggcccatccgcgccctggtgctc
tcgcctacccgcgagctggccgcccagatcggcgacagcctggcgaagtacggcaagttc
accccgctgcggcagacggttgtctttggcggcgtctcgcagcacagccagaccaaggcg
ctgcggcacggagtggacgcgctggtcgccacgccgggccggctgctcgacctgatggac
caaggctttatcgacctgtcgaagatcgaggtgctggtgttcgacgaggcggaccagatg
ctcgacatgggcttcctccccgcgctcaagcggatcgtggcggccgttcccaagcggcgg
cagacgctgatgttctcggccaccatgccggacgagatccgcaagctggctcagcagtgg
ctcaccaaccccgagtcgctcgagatgggggtcgtcgcccgcccggccgagcggatcgcc
cagtcggtccacctggtcgacgccaagaagaagcccgacctgctcacgcggttcctcaag
gagaccgcgcggtcgcggacgctggtgttcagccgcacgaagcacggggcggacaagatc
gtgaagcgactcacccaagaagggctccacgccgccgcgatccacggcaacaagagccag
ggcgcccgcacgcggaccctggcccagttcaaggggaagaacccgccggtgctggtggcg
accgacctggccgcccgcggcctggacgtggacgacatctcgcacgtggtgaactacgac
ctgcccgacacccccgagacctacgtgcaccgcatcggccgcaccgcccgcgcgggcgcc
gaagggatcgccgtgtcgttctgtgccggtgacgagcgcggactgctgcggcaaatcgag
cggctcaccaacctgacgatctcggtcgagccgacgatcgacggcttcgagccgaccgac
cccatcagccacgtcagccccaacgcccgcggccgtcagaacgccggcaagggtggcggc
gggccgcgtcggttcggcgccaagccgggcggcggcagcggctacgcgggcgcccgcacc
agcggctccggcggcggcagctacggaaagaagaaggcggccggaggcgtgtcgcccgcc
ggcatggctagcaagcgccgcccgcgtcggcgtccgaccgcgggctag
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