Pirellulimonas nuda: Pla175_42540
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Entry
Pla175_42540 CDS
T06953
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pnd
Pirellulimonas nuda
Pathway
pnd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pnd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pla175_42540 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnd03400
]
Pla175_42540 (mfd)
Enzymes [BR:
pnd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pla175_42540 (mfd)
DNA repair and recombination proteins [BR:
pnd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Pla175_42540 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QDU90841
UniProt:
A0A518DH87
LinkDB
All DBs
Position
complement(5377681..5380965)
Genome browser
AA seq
1094 aa
AA seq
DB search
MKQTAPVAGAEAADPGRLRGLADYLAQDSGLARVADCLAAGQSGTLGGVWGASRALVAAA
LAGRAPGALVVVCPRQADVDPLAGALPLFAPGRVARFPAWETEPDQRVAHDETFGLRLRS
LAALSGAQRLDRPKLVVTSIQALMQPTPARDALAGATRSVRVGESFDADAWREWLLAQGG
AQTSAVELPGEFAVRGGILDVFAPDAEHPLRIELFGDEVESIRPFEVATQRSLGALDHAP
LTMLKPGASDRSHFTAFLAPDTWFLLIEPADIAEEGRFYLERSTRPRDCHSVRTTLAEVY
KFPSVTAAGVPAGSLEETQHLGFESVERFSGDVHKVRNELESVADKNEVFIVCPTEADTE
RLAELFADSPLATEDRLRLVVGQLGEGFRYVGRNAVVLSSSELFNRHDVVRGSIRQVAAR
AIDSFLELREGDLIVHITHGIGRYRGIKLLEKEGAAEEHLELEYFGGTRIYVPASKIELV
QKYVGGKKLKPPLARIGGKAWVRQKEAAERATTDLAADMLELQARRDARPGVSFPSDTHW
QQEFDAAFPYQETPDQLTALEAIKDDMQAPRSMDRLLCGDVGFGKTEVAMRAAFKAVDAG
YQVAVLAPTTVLVEQHGRTFRERMAEFPFEIASLSRFCTKGEQTKLIKRAKEGSLDILIG
THRLASADVEFNNLGLLIIDEEQRFGVAVKERLKALRSAVDVLTMTATPIPRTLHMALLG
VRSISNLETPPADRLAVETRVSRFSDEMIRHALLRELNRGGQAYFVHNRVHDILKVAARI
EEIVPEARVCVGHGQMNEHELEEVMTRFVRHEYDVLLATTIIESGLDIPNANTMFIDDAD
RYGLADLHQLRGRVGRAQRRAYCYLLVDEDRRLTPEAARRLRAIEEFNQLGAGFALAMRD
LEIRGAGNLLGTEQSGHIAMVGYEMYCQLLEKAVRRLKKMAPREMVDVTIDLPVEAFLTA
EYAGDMRSRIDLYRRLARITSEAEVDDFGAELLDRFGPIPDPVTRLLELARLRVWAHGWG
VTLVRREDNYLVCGYSSSQKVRKLVEASGGRLRVADASSAYLPLGAGSGSGGGHAPAALL
ETAKALLRPAGAAP
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcaaacggctcccgtagccggcgcggaggcggccgaccccggtcggctccgcggg
ctggccgactatcttgcgcaggactccggcctggcgcgtgttgcggattgcctggcagcg
gggcagagcggcacgctggggggcgtctggggggcttcgcgcgcactggtcgcggcggcg
ctagccggccgggcgcccggcgccctggtggtggtgtgcccgcggcaggcagacgtcgac
ccgctggccggagcgctcccgctgttcgcgccgggacgcgtcgcgcgtttccctgcctgg
gagacagagcccgaccaacgcgtcgcccacgacgagacttttgggctgaggctgcgcagc
ctagcggcgctttcgggcgcccagcggctcgatcggccgaagctggtcgtcaccagcatc
caggcgttgatgcagcccaccccggcaagagacgctctggcgggcgccacccgcagcgtg
cgggttggcgagtccttcgacgcagacgcttggcgggagtggctgctggcgcaggggggc
gcgcaaacctctgcggtggagctgccgggcgagttcgcggtacggggcggcatcctcgac
gtcttcgcccccgacgccgagcacccgttgcggatcgagctgttcggcgacgaggtcgaa
tcgatccgccccttcgaggtcgccacgcagcggagcctgggcgcgctcgaccacgcgccg
ctcaccatgctcaagccgggcgcctcggaccgctcgcacttcacggcgttcctcgccccc
gatacttggttcttgctgatcgagccggccgacatcgccgaagaagggcggttctacctc
gaacgttcgacccgcccgcgtgactgccacagcgtgcgaacgaccctggctgaggtctat
aagttccccagcgttactgccgcgggggtgccggccgggtcgctggaggagacgcagcac
ctgggcttcgagtcggtggagcggttcagcggcgacgtgcacaaggtgcgtaacgagctg
gaatcggtcgcggacaagaacgaggtattcatcgtctgccctaccgaggcagacaccgaa
cgcctggcggagctgtttgccgacagcccgctagcaaccgaagaccggctgcggctggtg
gtggggcagctcggcgaggggttccgctacgtcggccgcaacgcggtggtgctgagcagc
tccgagctgttcaatcggcacgacgtggtgcggggctcgatccggcaggtcgcggcgcgg
gcgatcgactcgttcctggagctgcgtgagggggacctgatcgtccacatcacgcacggc
atcggccgctaccgcggcatcaagctgctggagaaagagggggccgccgaggagcaccta
gagctagagtacttcggcggcacgcggatctacgtgccggcgtcgaagatcgagctggtg
cagaaatacgtcggcggcaagaagctcaagccgccgctggcgcggatcggcggcaaggcg
tgggtccggcagaaagaagcggccgagcgggccaccaccgacctcgccgcggacatgctg
gaactgcaagcccggcgcgacgcgcggcccggcgtcagcttccccagcgacacgcactgg
cagcaggagttcgacgcggcgttcccctaccaagagacccccgaccagctaaccgccctg
gaggcgatcaaggacgacatgcaggccccgcgcagcatggaccggctgctgtgcggcgac
gtcggcttcggcaagaccgaggtggcgatgcgggccgcgttcaaggcggtggacgccggc
taccaagtcgccgtgctggcgcccaccacggtgctggttgagcagcacggccgcacgttc
cgcgagcggatggcggagttcccgttcgagatcgcctcgctctcgcgattttgcaccaag
ggggagcagaccaagctgatcaagcgggccaaggagggctcactcgacatcctgatcggc
acgcaccggctcgcctcggcggatgttgagttcaacaatctggggctgctgatcatcgac
gaggaacaacgcttcggcgtggcggtgaaggagcggctcaaggcgctacgctcggccgtg
gacgtgctcaccatgacggcgaccccgatcccgcggacgctgcacatggcgctgttgggc
gtacgcagcatctccaacctagaaacgccgccggccgatcgtttggcggtcgagacgcgc
gtctcgaggttcagtgacgagatgatccgccacgcgttgttgcgggagctcaaccgcggc
gggcaggcttactttgttcacaaccgcgtgcacgacatcctcaaggtggcggcccggatc
gaagaaatcgttccggaagcccgcgtctgcgtcgggcacgggcagatgaacgagcacgag
ctggaagaagtgatgacccgcttcgtgcggcacgagtacgacgtgctgctagcgaccacg
atcatcgagagtgggctcgacatccccaacgccaacacgatgttcatcgacgacgccgac
cgctacgggctggcggacctgcaccaactgcggggacgcgtgggccgcgcccagcggcgt
gcctactgctacctgctggtggacgaggaccgccggctcacccccgaggcggcccgccgg
ctgcgggcgatcgaggagttcaaccagttgggcgccggcttcgccctggcgatgcgcgac
ctggagatccgcggcgccggcaacctgctggggaccgagcagtcgggccacatcgcgatg
gtgggctacgagatgtactgccagctcttggagaaggcggtccgtcggctcaagaagatg
gcgccccgcgagatggtggacgtcaccatcgacctccctgtcgaggccttcttgaccgcc
gagtacgccggcgacatgcggagccggatcgacctctaccgccgtctggcgaggatcacc
agcgaggcggaggtagacgacttcggggcggagctgctcgaccgcttcggccccatcccc
gacccggtgacgcggttgctggagctagcacgcctgcgggtttgggcgcacggctggggg
gtgacgctggtgcggcgcgaggacaactacctggtgtgcgggtattcgtcgagccagaag
gtcaggaagctggtcgaggcctcgggggggcgcctgcgtgtggccgacgcgtcgagcgcc
tacctgcctctgggtgcgggcagcggctcgggcgggggccacgcgccggccgcgttgctc
gagaccgctaaagcgctcttgcggcccgctggcgcggccccgtag
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