Pirellulimonas nuda: Pla175_48620
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Entry
Pla175_48620 CDS
T06953
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pnd
Pirellulimonas nuda
Pathway
pnd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pnd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Pla175_48620 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnd03021
]
Pla175_48620 (rpoC)
03400 DNA repair and recombination proteins [BR:
pnd03400
]
Pla175_48620 (rpoC)
Enzymes [BR:
pnd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Pla175_48620 (rpoC)
Transcription machinery [BR:
pnd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Pla175_48620 (rpoC)
DNA repair and recombination proteins [BR:
pnd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Pla175_48620 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
Ploopntkinase3
Motif
Other DBs
NCBI-ProteinID:
QDU91434
UniProt:
A0A518DIY5
LinkDB
All DBs
Position
6159676..6164016
Genome browser
AA seq
1446 aa
AA seq
DB search
MSLLETSNYDRINDYASVKISLARPHDIRSWSFGEVKKPETINYRTYRPEKDGLFCERIF
GPEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKAMPS
RLGSLLAMKTTSLEKVIYFQDYVVTNPGDTPLKMQQMLTEEEYRQAREQYGEGTFEADMG
AEAVRKLLMSLDLVTLSDTLRVELKETGSKQKAKDLINRLKTVEAIRDSDNKPEWIVLDV
IPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIIRNEKRMLQQ
SVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPKL
RLHQCGLPKKIALELFQPFIIRRLKELGHADTIKSAKKMLERKDEEVWDILEEVITNHPV
LLNRAPTLHRMGIQAFEPILVEGNAINLHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAH
TLMMSTHNIFSPSNGAPIISPSQDVVMGSYYITMDVPEAPGDGMAFSNFEEVEMAHSLGK
VHTHAKIKVRLPESRVLRDELGNPNAAGKVVETTVGRVIFNEMLPDGMPYYNVPMRSSEL
SRVISDCYEILGRRQTIELLDDMNRTGFRMATRSGLSFATDDLVTPDTKQKILGVAEKEV
IKHNKNYQRGIITENERYSKVLDAWTHAREQITQEMMDALKIDFRPGQYVNPIYLMAHSG
ARGGVEQMRQLGGMRGLMAKPSGKIIETPIKANFREGLTVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADVAQNVVITLDDCGTTQGITKGIIYRGEKVEVGLADSIRGRVSRQNIV
NPITDEKIVQENELITADVGRKIEQLGLEKIQVRSPMTCDAALGVCRKCYGMDLSTGSMV
EEGMAVGIIAAQSIGEPGTQLTMRTFHIGGVATGNVEQSDTKANKGGVAKFAKLNAVHNA
EGELVVLGRNGEVALVDEKGREIEKHEVPTGAVIKVKENEMVKKGQVLCEWDPHSIPILA
EKGGKIRFEDLVEGETMRSEKDASGYTRYLMMEHKGDLHPQVVIEDVKDGKILDFHYMPE
KAYLEVKEGDVIVAGTLVAKTPRVAAGTQDITGGLPRVTEIFEARKPKDPAVIAEIDGVV
EIMPEKKRGKRSIVVRSTTGVEREHLVTHNKHLRVHSGDEVRAGDSLVDGPLVPHDILRV
SGEEAVQQYLTREIQNVYRAQRVEINDKHIEIIVSQMLRKVRVEHPGDTNLLPGSVIDKY
DFRVANDQVSSCVKISEKGDSDFSVGAIVPKEVLEQTNAQIEALGGEIAKGSRTKKASSS
TQLLGITKASVQSSSFISAASFQETTKVLTEAALAGRTDHLVGLKENVILGHLIPAGTGF
RTIQEAEVRIRPEALEALAAEKASVLERAFPLLEAAAGNGEAEQPKKEAPPATGLDALLG
GGGGQE
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgctcgaaacgtcaaactacgaccgcatcaacgactacgcctcggtcaagatc
agccttgcgcgaccgcacgacatccgtagctggtcgttcggcgaggtcaagaagcccgag
acgatcaactaccgcacgtaccggcccgagaaggacgggctgttctgcgagcgcatcttc
ggcccggagaaagactgggagtgcgcctgcggcaagtaccgcggcatgaagtacaagggg
atgatctgcgaccgctgcggcgtgaaggttacgcacagccgcgtgcggcgcaagcggatg
ggccacatcgagctggcggcgccggtggtgcacatctggttcttcaaggcgatgccgagc
cggttgggttcgctgctcgcgatgaagaccaccagcctcgaaaaggtgatctacttccag
gattacgtggtcaccaaccctggcgacacccccctcaagatgcagcagatgctgaccgaa
gaggagtaccgccaagcccgtgaacagtacggcgagggcacgttcgaggccgacatgggc
gccgaggcggtccgcaagctgctgatgtcgctcgacctcgtgacgctgagcgatacgctg
cgggttgagctcaaggagaccggcagcaagcagaaggccaaggacctgatcaaccggctc
aagaccgtcgaggcgatccgcgactccgacaacaagccggagtggatcgtgctggacgtg
atcccggtgatcccccccgacctgcgcccgctggtgctgctggacagcggcaacttcgcc
acgagcgacctgaacgacctctaccggcggatcatcaaccgcaacaaccggctcaagaag
ctggtcgacctgaacgcgcccgaggtgatcatccgcaacgagaagcggatgctgcagcag
agcgtcgacgcgttgttcgacaacaaccgctgcaagcggcccgtgctcggttcctcgaac
cgcccgctcaagtcgctcaccgacatgatcaagggcaagcagggccggttccgcgagaac
ctgctcggcaagcgggtggactactccgcgcggagcgtgatcgtggtcggccccaagctg
cggctgcaccagtgtggcctgccgaagaagatcgcgctggagctgttccagccgttcatc
atccgccgcctgaaggagctgggccacgccgacacgatcaagtccgccaagaagatgctg
gagcggaaggacgaagaggtgtgggacatcctcgaagaggtgatcaccaaccacccggtg
ctgttgaaccgggcgcccacgctgcaccgcatgggcatccaggcgttcgagccgatcctg
gtggaaggcaacgccatcaacctgcacccgctggtgtgcaagggcttcaacgccgacttt
gacggcgaccagatggcggtccacctgccgctgtcgatcgaggcccaggtggaggctcac
acgctgatgatgagcacccacaacatcttcagcccctcgaacggggcgccgatcatcagc
cccagccaggacgtggtgatggggagctactacatcacgatggacgtccccgaggccccg
ggcgacggcatggccttctccaactttgaagaagtggagatggcccactcgctgggcaag
gtgcacacgcacgccaagatcaaggtccgcctccccgagagccgggtgctgcgtgacgag
ctgggcaaccccaacgcggccggcaaggtggttgagaccaccgtcgggcgggtcatcttc
aacgagatgctccccgacggcatgccctactacaacgtgccgatgcgttccagcgagctc
tcgcgggtcatcagcgactgctacgagatcctcggccgccggcagaccatcgagctgctg
gacgacatgaaccgcaccgggttccgcatggccacccgcagcgggctctccttcgccacc
gacgacctagtgaccccggacaccaagcagaagatcctgggggtcgccgagaaggaggtc
atcaagcacaacaagaactaccaacgcggcatcatcacggagaacgaacgctacagcaaa
gtcctcgacgcctggacccacgcccgcgagcagatcacccaggagatgatggacgcgctg
aagatcgacttccgccccggccagtacgtcaacccgatctacctgatggcgcactccggc
gcccgaggcggcgtcgagcagatgcgtcagctcggcggcatgcgggggctgatggccaag
ccgtccggcaagatcatcgagacgcccattaaggccaacttccgcgaggggctcacggtg
ctcgagtacttctccagcacccacggcgcccgcaaggggttggcggacaccgccctcaag
acggccgactccgggtacctcacccgtaagctggccgacgtcgcccagaacgtggtgatc
acgctcgacgactgcggcaccacccagggcatcaccaagggcatcatctaccggggcgag
aaggtggaggtcggcctggccgactcgatccgcggacgcgtcagccggcagaacatcgtc
aaccccatcaccgacgagaagatcgttcaagagaacgagctgatcaccgccgatgtcggc
cgcaagatcgagcagctcggcctggaaaagatccaggtccgcagcccgatgacctgcgac
gccgcgctgggggtgtgccgcaagtgctacggcatggacctctccaccggctcgatggtg
gaagaagggatggcggtgggcatcatcgccgcccagagcatcggcgagcccggcacgcag
ctcaccatgcggacgttccacatcggcggcgtcgccaccggcaacgttgagcagagcgac
accaaggccaacaaggggggcgtggcgaagttcgccaagctcaacgcggtgcacaacgcc
gaaggcgagctggtggtgctcggccgcaacggcgaggtcgccctggtggacgagaaggga
cgcgagatcgagaagcacgaagtgcccaccggcgccgtgatcaaggtcaaagagaacgag
atggtcaagaagggccaggtcctctgcgaatgggacccgcactccatcccgatcctcgcg
gagaaggggggcaagatccgcttcgaagacctggtcgagggcgagaccatgcggtccgag
aaggacgccagcggctacacccgctacctgatgatggagcacaagggcgacctccacccg
caggtggtgatcgaagacgtcaaggacggcaagatcctcgacttccactacatgcccgag
aaggcctacctggaagtcaaggaaggagacgtcattgtcgccggcacgctggtcgccaag
accccccgtgtcgcggccggcacccaggacatcaccggcggtctgccgcgggtgacagag
atcttcgaggcccgcaagccgaaagacccggcggtgatcgccgagatcgacggcgtggtc
gagatcatgccggagaagaagcggggcaagcggtcgatcgtggtccgcagcaccaccggc
gtcgagcgcgagcacctggtcacccacaacaagcacctccgggtccactcgggcgacgag
gtgcgagccggcgactcgctggttgacgggccgctggtgccgcacgacatcctccgcgtc
tcgggcgaggaggcggtgcagcagtacctgacccgcgagatccagaacgtctaccgggcc
caacgcgtcgagatcaacgacaagcacatcgagatcatcgtctcgcagatgctccgcaag
gtgcgggtcgagcacccgggcgacacgaacctgctgcccggctcggtgatcgacaagtac
gacttccgcgtggccaacgaccaggtctcctcctgcgtcaagatcagcgagaagggcgac
agcgacttcagcgtgggcgccatcgtcccgaaggaagtgctggagcagaccaacgcccag
atcgaggccctcgggggcgagatcgccaagggctcgcgcaccaagaaggccagttcttcg
acgcagctcttgggcatcaccaaggcgtcggtgcagagcagcagcttcatctcggccgcc
agcttccaggagaccaccaaggtgctcaccgaggcggccctggcggggcggaccgaccac
ctggtcggcctcaaggagaacgtgatccttggccacttgatcccggccggaaccggcttc
cgcaccatccaagaggccgaggtgcggatccgccccgaagcgctcgaggccctcgcggcc
gagaaggccagcgtgctcgaacgggccttcccgctgctagaagccgcggccggcaacggc
gaggccgagcagcccaagaaggaagcgcccccggcgaccggcctggacgccctgctgggc
ggcggcggcggtcaggaatag
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integrated database retrieval system
