Polynucleobacter necessarius: Pnec_0002
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Entry
Pnec_0002 CDS
T00683
Name
(GenBank) DNA polymerase III, beta subunit
KO
K02338
DNA polymerase III subunit beta [EC:
2.7.7.7
]
Organism
pne
Polynucleobacter necessarius
Pathway
pne03030
DNA replication
pne03430
Mismatch repair
pne03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pnec_0002
03430 Mismatch repair
Pnec_0002
03440 Homologous recombination
Pnec_0002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pne03032
]
Pnec_0002
03400 DNA repair and recombination proteins [BR:
pne03400
]
Pnec_0002
Enzymes [BR:
pne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pnec_0002
DNA replication proteins [BR:
pne03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Pnec_0002
DNA repair and recombination proteins [BR:
pne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Pnec_0002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_beta_2
DNA_pol3_beta
DNA_pol3_beta_3
Fn3_nematode
Motif
Other DBs
NCBI-ProteinID:
ACB43333
UniProt:
B1XSB5
LinkDB
All DBs
Position
1802..2917
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AA seq
371 aa
AA seq
DB search
MQLVNTSRDNLLKPLQVVSGIVERRHTLPILANLLFKKIEEKVSFVSTDIEIQITTNANF
GVGSEDVTTTVAARKLLDILRALPEGPVFLNLKDSKMVVQSGKSRFSLQTLSATEFPVMQ
SVGEVTAAWKMSQKSFRQLISQVHFSMAQQDIRYYLNGMLLVVEGKEVVAVATDGHRLAY
SQVELVEAPSGSGQKQEVIIPRKTILECQHLLEGSDEPLEISLTANQVKFSFGDIELISK
LVEGKFPDFQRVIPKGQKNSLVVGRDALQSALQRAAILTTDKFKGVRFSLSPNRITIQST
NAEQEEAQEEIETEYAGDAVEIGFNVSYLLDVLSNLKNEKIQISLGDANSSAVITLPGSE
SFKYVVMPMRI
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgcaactcgttaacacttctcgcgataacttactaaaacctcttcaggttgttagtgga
attgttgaacgcagacatacactaccaattttggctaatctactttttaaaaagattgag
gaaaaagtttcctttgtctctactgatattgaaattcaaatcaccactaatgcaaatttt
ggtgttggtagtgaggatgtaacgacaactgttgccgcaagaaaattacttgatattttg
cgtgcgttaccagaaggtccagtgtttttaaatcttaaggacagtaaaatggttgttcaa
agcggtaaaagccgcttttctttacaaacactatccgcgacagagtttcctgtgatgcaa
agtgttggtgaggtgactgctgcatggaagatgtcacaaaagagcttccgccagttaatt
agtcaagtgcatttttcaatggcacagcaagatattcgttattacttaaacggtatgttg
ttagtcgttgaaggtaaggaggttgttgctgttgcgaccgacggtcatcgccttgcatat
tcacaagttgagttggttgaagctccatctggctcgggtcagaagcaagaagtcatcatt
ccacgtaaaactattttggaatgtcagcatttactggaaggctctgatgagcctcttgag
attagcctgaccgcaaaccaagtgaagttttcttttggtgatattgagttaatttctaag
ttggttgaaggaaagtttcctgatttccaaagagtaattccaaaagggcaaaagaactca
ttagtagtcggacgtgatgctttgcaatctgctcttcaacgtgccgctattttgacaacg
gataaatttaaaggcgttcgtttttccttgtcacccaatcgcattaccattcaatcaact
aacgccgaacaagaagaagctcaagaagagattgaaacagaatatgccggcgatgctgtg
gagattggatttaatgtgagctatttacttgatgttttatcaaacctcaagaatgaaaaa
attcaaattagtttgggtgatgcaaatagtagtgctgtgattactctgcctggctcagag
agctttaagtatgttgtgatgccaatgcgtatttaa
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