Polynucleobacter necessarius: Pnec_0076
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Entry
Pnec_0076 CDS
T00683
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pne
Polynucleobacter necessarius
Pathway
pne03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pne00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Pnec_0076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pne03021
]
Pnec_0076
03400 DNA repair and recombination proteins [BR:
pne03400
]
Pnec_0076
Enzymes [BR:
pne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Pnec_0076
Transcription machinery [BR:
pne03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Pnec_0076
DNA repair and recombination proteins [BR:
pne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Pnec_0076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
DUF6165
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
ACB43404
UniProt:
B1XSS7
LinkDB
All DBs
Position
70443..71423
Genome browser
AA seq
326 aa
AA seq
DB search
MQTNLLKPKIISVEALTANQAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVAIAG
VVHEYSTLDGVQEDVVNLLLNLKGIVFKLQSRDEVIINLRKEGPGVVTAKDIDLPHDVEI
MNPDHVIAHLSAGGKLDMQIKVEKGRGYVPGNVRQYNDEATKIIGHIVLDASFSPVSRVS
YAVESARVEQRTDLDRLVMTIETNGVLSPEEAIRQAASILVDQLVVFAALESSEVSGDLA
PSRSSMVDPMLMRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNE
IKDVLAARGLSLGMKLESWPPANLEK
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacaaatttgctcaagccaaagattatttctgttgaagcgcttaccgccaaccaa
gctaaagttgttatggagccgttcgagcgtggctatggccacacactcggaaacgcattg
cgtcgtgtgcttttgtcctcgatggttggttatgcgccaactgaagtagctattgctggt
gttgttcatgagtactccactttagatggagttcaagaggatgtagttaaccttttgttg
aacctcaaaggtatcgtatttaagttgcagtcacgtgacgaagttattatcaatttgcgt
aaagaaggcccaggcgttgttacagcaaaagatatcgatttgccacatgatgtagaaatc
atgaatcctgatcatgttattgcccatttgtccgctggcggcaagttggacatgcagatt
aaggttgaaaaaggccgtggttatgttccgggtaacgtacgtcagtacaacgacgaagct
actaagattattggccatattgttttagatgcatcgtttagcccagttagccgtgttagc
tatgctgttgagtctgctcgtgttgagcaacgtaccgacctcgatcgtttagtaatgact
atcgaaactaacggtgttttgtctcctgaggaggcaattcgtcaagcagctagcatcttg
gttgatcagttggttgtattcgcagccctcgaaagcagcgaagtttctggtgatttggca
ccaagccgctcttcaatggttgatccaatgttgatgcgcccagtagatgacctcgagttg
acagttcgctctgctaactgcttgaaggctgagaacatttactacatcggtgacttgatt
caacgtacagagaatgaattgttgaagacgcctaatctaggtcgtaaatctttgaatgaa
attaaagatgttttggcggcccgtggcttaagtcttggcatgaaactcgaaagctggcct
ccagctaacctcgagaaataa
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