Polynucleobacter necessarius: Pnec_0236
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Entry
Pnec_0236 CDS
T00683
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pne
Polynucleobacter necessarius
Brite
KEGG Orthology (KO) [BR:
pne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pne03016
]
Pnec_0236
Enzymes [BR:
pne01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pnec_0236
Transfer RNA biogenesis [BR:
pne03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Pnec_0236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ACB43533
UniProt:
B1XT56
LinkDB
All DBs
Position
214504..216546
Genome browser
AA seq
680 aa
AA seq
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MNLLYEEGGDIKIATVQSASGTGDAESWQATSLSGKKIKLKAKEVWLRFEKPEAQAAMDE
ASTLTADIDLQLLWDCAPDEEFGLVEVAHEYFGSQVSVVQQVALAIALQGAPVIFRRKGR
GRFQRASLEQLQAGLAALERKQKELEQQAVWQQELVAGTFPERLKSSAKQLLFSPDKNTL
AYKALIAACTETGESPAQLMIRCGAIDSPLAYHQGMFLKAHFPNGAAHNSSVGIDQEAYA
AAIAELLLAQVQAFSIDDSGTTEIDDALSVTTLPEGGHRVGIHIAAPGLAIVKDDQLDQV
ARNRMSTVYFPGDKITMLPESVIEQFSLDEGMPRPALSIYADIDAQGVVNRETLQMRAEM
VPMAANLRLEDIEHLVTDESLSDESASYPYRKELTILWQAAKHLHAGRQEKRVANGLRAE
QLGLIDLNALARDFHFQIQEVDGVQRVDIVPRQRGSILDTIVAEWMIFCNSASGQLLADH
GLPGLFRTQKGWGPLRTRMQTTPGPHEGLGLDYYAWCTSPLRRYSDLVNQWQLIALAKHG
VTAKMVAPFPPRDATLMGIAADFESCYQAYEEFQDRLEKYWCLRWIMQDGESKTVHVRHL
KEGMSRVELVPLHLSVPELASHPRMTRAEVVIADVDLLQLSAGVRVLEIEAKLETPEKES
AEQDVMSEPSGNSEEDASPN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttatacgaagaaggtggcgatatcaagatcgccacagtccagtctgcctct
ggtaccggtgatgcagagtcttggcaggcgactagcctttctggaaaaaagatcaaactc
aaggccaaagaggtttggttgcgttttgaaaagccagaagctcaggcggctatggatgag
gctagcaccctgactgccgatattgatttgcaattgctttgggactgcgctccagacgaa
gaatttggtttggtagaggtagctcacgaatactttggctcgcaagtaagtgttgttcaa
caggttgcgttagcgattgccttacaaggcgcgccagtaattttccgccgcaaagggcgt
ggtcgttttcaaagggcttcgcttgagcaattgcaggcgggcctcgctgcattggaacgt
aagcaaaaagagcttgagcagcaagcggtatggcagcaagagttagttgctggcaccttt
ccggaaagactcaagtcttcagccaaacaattacttttttctcctgataaaaatacttta
gcctacaaagctttaatcgcagcctgtactgaaacgggagagtctccagcgcagttgatg
attcgttgtggtgcaattgattcacccttggcttatcaccagggtatgtttctcaaggcg
cattttccaaatggagcagctcataactcgagtgttggcatcgatcaggaggcttatgct
gcagccattgctgagctcctacttgcccaggtgcaagccttctcaattgatgattcagga
actacggagattgatgatgctttgtcagtcacaaccttgccggagggtgggcatcgggta
ggcattcatattgctgcaccagggctggcaattgttaaagatgaccaattggatcaagtc
gcccggaatcgtatgtctacggtgtacttcccgggtgacaaaattacgatgcttcccgaa
tcagtcatagagcaattctcattagacgagggcatgccaagaccagccttatcgatctat
gctgatattgatgctcaaggagtggtgaatcgagagaccttgcagatgcgcgcagaaatg
gtgccgatggcggccaatttacgcttggaggatatagagcatcttgtgactgatgagagc
ttgtctgatgaaagtgcaagttatccctatcgtaaagaattgactatcttgtggcaggcc
gccaaacatctgcatgctggtcgccaagaaaagcgcgtggcaaatggtctgcgggctgag
caactaggattaattgatctcaatgctcttgcaagggattttcattttcaaatacaagaa
gttgatggcgtgcaacgagttgatatcgtgccgcgtcaacgtgggtctattttggacacc
atcgttgcagaatggatgattttctgtaacagcgcttccggccagctcctggcggatcat
ggtctgccgggattattcagaacccagaagggctggggcccgttgcgcacacgcatgcaa
accaccccaggaccgcatgaaggtttaggcttggattattacgcttggtgcacctctccc
ttgcgtcgatattctgacttggttaatcaatggcaattaatcgcgcttgcgaagcatggc
gtcaccgccaaaatggttgcgccatttccgccacgcgatgcaacactcatgggaattgcg
gctgactttgagtcttgttatcaagcttatgaagagtttcaagatcggttggaaaaatat
tggtgtctacgttggattatgcaagatggtgaatctaaaacggttcacgtacgccatcta
aaagagggcatgtccagagtggaattggtgcctctgcatttgtcggttccagagcttgca
agtcatccacgcatgacacgtgcagaagtggtaattgccgatgtagatttattgcaactc
agtgcgggcgttagggtgctggagatcgaggcgaagcttgaaactcctgaaaaggagtcg
gctgagcaggacgtaatgtcagagccatcaggtaattccgaagaagatgctagtcccaat
taa
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