Polynucleobacter necessarius: Pnec_1252
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Entry
Pnec_1252 CDS
T00683
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pne
Polynucleobacter necessarius
Pathway
pne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pnec_1252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pne03019
]
Pnec_1252
Enzymes [BR:
pne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pnec_1252
Messenger RNA biogenesis [BR:
pne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pnec_1252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACB44385
UniProt:
B1XVK8
LinkDB
All DBs
Position
complement(1085858..1087297)
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AA seq
479 aa
AA seq
DB search
MTNTATEINSSTGVSEAATPDATSATPPATITFADFGLDPQIQKAVAEQGYNTPTPIQAQ
SIPHVLAGNDLMGAAQTGTGKTAAFVLPIIQKILRHASNSASPARHPIRALVLTPTRELA
VQVAENAASYSKHTDLRAAVVYGGVDMKEQVAILRNGVEILIATLGRLLDHIGSKVANLS
QVEILVLDEADRMLDMGFLPDLQRIISLIPAQRQTLLFSATFSPEIKKLAQSYLRSPVTV
EVARQNAAADTVKQVVHMVSSADKQRAIVKVLEARARAGLSRQCIIFTNSRLGCAKLSRT
LERDGIKAGAIHGDKGQGERTLTLDAFKSGAIEALVATDVAARGLDIPDMPCVINHELPY
NAEDFIHRIGRTGRAGSKGDAIALVDLSEKRLLDDIEKLMKRKLDVKPLPEGASLQSRPS
SSGYGSAPAKMSDPFFYKPYEPSTSTASATDTAKPEEKKVGIKPAKPAVGALLGGFKKK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatactgctactgaaataaattcttctacaggggttagcgaagctgctacccct
gacgctacaagcgctacccctccagcaacaattactttcgctgattttggtttagacccg
caaattcaaaaagcggtcgctgaacagggttataacactccgactccaattcaagcgcaa
tcgattccgcacgttttagcgggaaacgatctcatgggcgctgcgcaaactggaactggt
aagacagccgcttttgtgttgccgattattcaaaagattttgcgtcatgctagcaatagt
gcctcaccggcacgtcatccgattcgtgcgcttgttctcacaccaacccgcgagttagcg
gtgcaagtggcagaaaatgccgcaagctattctaagcataccgatctacgtgccgcagta
gtttatggcggcgtagatatgaaggagcaggttgcgattttgcgcaatggcgtagaaatc
ttgatcgccactctcggacgtttactggatcacatcggctctaaagtggccaatctctct
caagtagagatcttggtcttagacgaagcagaccgcatgcttgacatgggcttcttgccg
gacctgcaacgtatcattagtttgattccggcacaaagacagactctattgttttcggct
actttctctccagaaatcaaaaagttggcgcaaagctatttacgctctccagtaactgtt
gaggtggcacgtcaaaatgcggctgccgataccgtgaaacaggtggtgcatatggtttcc
tctgcggataagcaacgtgcgattgttaaagtacttgaagcgcgcgcacgtgctggcttg
tcacgccaatgcatcatctttacaaatagtcgtttgggctgcgcaaaattatctcgtacg
cttgagcgtgatggtattaaagcgggcgcgattcatggcgataagggtcaaggtgaacgt
acattaactttggatgcctttaagtcgggagcaattgaagcattggtagcaaccgatgtg
gctgcgcgaggtttggatatcccggatatgccttgtgtgattaatcacgaattaccctac
aacgcagaagactttattcaccgtattggacgaacaggtcgtgccggcagtaaaggtgat
gcaatcgcattggtagatctgagtgaaaagcgcttactcgacgatattgaaaagttgatg
aagcgtaaattggatgtgaagcctttgcctgagggtgcgtctttacaaagtcgcccatca
tctagtggttatggcagtgctccggcaaaaatgtcagaccccttcttctataagccttat
gagccatccacatctacagcatctgctacagatactgcaaagcctgaagagaaaaaagta
ggtattaagcctgccaagcccgctgttggtgctttactcggtggctttaaaaagaaataa
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