Polynucleobacter necessarius: Pnec_1518
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Entry
Pnec_1518 CDS
T00683
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pne
Polynucleobacter necessarius
Pathway
pne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pnec_1518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pne03019
]
Pnec_1518
03110 Chaperones and folding catalysts [BR:
pne03110
]
Pnec_1518
03029 Mitochondrial biogenesis [BR:
pne03029
]
Pnec_1518
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pne04147
]
Pnec_1518
Enzymes [BR:
pne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Pnec_1518
Messenger RNA biogenesis [BR:
pne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Pnec_1518
Chaperones and folding catalysts [BR:
pne03110
]
Heat shock proteins
HSP60 / Chaperonin
Pnec_1518
Mitochondrial biogenesis [BR:
pne03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Pnec_1518
Exosome [BR:
pne04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Pnec_1518
Exosomal proteins of other body fluids (saliva and urine)
Pnec_1518
Exosomal proteins of breast cancer cells
Pnec_1518
Exosomal proteins of colorectal cancer cells
Pnec_1518
Exosomal proteins of bladder cancer cells
Pnec_1518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
ACB44606
UniProt:
B1XRX1
LinkDB
All DBs
Position
complement(1322998..1324641)
Genome browser
AA seq
547 aa
AA seq
DB search
MAAKDVVFGDSARTKMVEGVNILANAVKTTLGPKGRNVVIERSFGGPIITKDGVSVAKEI
ELKDKLQNMGAQMVKEVASKTADIAGDGTTTATVLAQSIVREGMKYVVSGYNPLDLKRGI
DKAVTAAIEELAKISKPCTTTKEIAQVGSISANSDQSIGQRIAEAMEKVGKEGVITVEDG
KSLEDELEVVEGMQFDRGYLSPYFINQPEKQVAVLESPYVLLFDKKIANIRDLLPVLEQV
AKSGRPLLIIAEDVEGEALATLVVNNIRGIIKTCAVKAPGFGDRRKAMLEDIAILTGGIV
IAEEIGLTLEKTTLEHLGQAKRLEVGKENTIIIDGAGDAKAIEARVKNIRVQVEEATSDY
DKEKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVDDALHATRAAVEEGIIPGGGVALI
RAMQGIKGLKGDNADQDAGISIVLRAMQEPLRTIVSNAGEDAGVVVNAVQASKGNNGYNA
ATGEYGDLVAQGVIDPTKVTKAALVNAASVAGLLLTTDCAISEAPKDESAGGGMPDMGGM
GGMGGMM
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaaagacgttgtatttggagatagcgcccggactaagatggtcgagggcgta
aatattcttgctaatgcagtgaaaacaactttgggaccaaaaggccgcaatgtagtaatt
gaacgttcattcggtggaccaataatcactaaagacggtgtatccgttgcaaaagaaatc
gaactcaaagacaagcttcaaaacatgggtgcgcagatggttaaggaagttgcttccaaa
actgctgacatcgctggtgacggtacgactaccgctactgttttggcgcagtctatcgtt
cgcgaaggtatgaaatatgtagtttcaggctataacccattggacttaaagcgcggtatc
gataaggctgtaacagctgcaatcgaagagctcgcaaaaatttctaagccttgcacgacc
actaaagaaatcgctcaagtaggttctatttctgcaaacagcgaccaaagtattggtcag
cgtattgcagaagcgatggaaaaagtaggtaaagaaggtgttattactgttgaagacggt
aagtctttagaagacgagcttgaagtagttgagggtatgcagtttgatcgcggctacctc
tctccatacttcattaaccaaccagaaaaacaagttgctgtattggaaagcccatatgtt
ctgttgtttgacaagaagattgccaacatccgcgatttgctcccagtactcgagcaagta
gctaagtctggtcgtccattattaatcattgcagaagatgttgaaggtgaagccttggca
actttggttgtgaacaacatccgcggcattatcaaaacttgcgccgttaaagcccctggt
ttcggcgatcgtcgtaaagccatgctggaagacatcgcgattttgactggcggtatagta
atcgctgaagaaatcggcctcacacttgaaaaaactactcttgagcatttgggtcaagcc
aagcgcctcgaagtaggcaaagaaaacaccatcatcattgacggtgctggcgatgctaaa
gcgattgaagctcgtgtgaagaacattcgtgttcaggtcgaagaagcaaccagtgactac
gacaaagaaaaattgcaagaacgtgtagccaagttggctggcggtgttgcggtaattcgt
gttggcgcagctactgaagtagaaatgaaagaaaagaaagctcgtgttgacgatgcattg
catgcaacgcgtgcagctgtggaggagggtattattcctggcggcggcgtagcgttgatt
cgcgcaatgcaaggcatcaaaggtctgaaaggcgacaacgctgatcaagacgctggtatc
agcatcgtattgcgcgctatgcaagagccattgcgtactatcgttagcaatgctggagaa
gacgcaggcgtggttgttaacgctgttcaagcaagcaaaggtaataacggttacaacgct
gctaccggtgaatacggcgacctcgttgcacagggcgttatcgacccaaccaaggtaact
aaagctgcattggtaaatgcggcttcagttgctggcctcttgttgactactgattgcgca
atttctgaagcgccaaaagatgagtctgctggtggcggtatgcctgatatgggcggcatg
ggtggtatgggcggcatgatgtaa
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