Polynucleobacter necessarius: Pnec_1610
Help
Entry
Pnec_1610 CDS
T00683
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
pne
Polynucleobacter necessarius
Pathway
pne03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pnec_1610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pne03400
]
Pnec_1610
DNA repair and recombination proteins [BR:
pne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pnec_1610
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pnec_1610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
AAA_21
BCA_ABC_TP_C
AAA_23
AAA_22
AAA_25
DnaJ_CXXCXGXG
nSTAND3
Viral_helicase1
APS_kinase
cobW
Motif
Other DBs
NCBI-ProteinID:
ACB44684
UniProt:
B1XS49
LinkDB
All DBs
Position
1411834..1414731
Genome browser
AA seq
965 aa
AA seq
DB search
MNNEIKIRGARTHNLKNINLDIPREKLVVLTGLSGSGKSSLAFDTLYAEGQRRYVESLSA
YARQFLQLMEKPDVDTIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPH
CPDHDLPLEAQSVSQMVDTVLSMPEDTKLMVLAPVVSERKGEFVDLFQDLQAQGFVRFRV
RSGGGTANAAKAEIFEVDQLPTLKKNDKHSIEMVVDRIKVRPDIQQRLAESFETALRLAD
GKAMIVDMDTGKEMIFSSKFACPVCSYSLQELEPRLFSFNNPMGACPSCDGLGHQSFFDP
KRIVAHPDLSLASGAIKGWDRRNQFYFKLLQTLAKHGGFDVEKPFETLSKKQQDLILLGS
GDVTIPFEYINERGKNSIREHAFEGIVANFERRYRETDSMTVREELSRYQNVQTCPGCNG
SRLRKEARFVEVGEKKQSRAIYEISALPLKEAKEYFETLELKGAKREIADKIVKEISARL
RFLNDVGLDYLSLERSADTLSGGEAQRIHLASQIGSGLTGVMYVLDEPSIGLHQRDNDRL
IGTLKHLRDLGNSVLVVEHDEDMIRASDWVIDIGPGAGVHGGEVVAQGTPTEIEANPNSL
TGAYLAGREVIAVPDKRIPVNERFLEIIGARGNNLQSVHAKIPVGLLTCVTGVSGSGKST
LINDTLHHAVAQHLYGSNAEPAAHDAIKGLEHFDKVISVDQSPIGRTPRSNPATYTGLFT
PIRELFAGVPASRERGYEAGRFSFNVKGGRCDSCEGDGVLKVEMHFLPDVYVPCDVCHGK
RYNRETLDIRYKGKNIHEVLSMTIEQAHEFFEAIPVVKRKLKTLLDVGLGYVKLGQSATT
LSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIQLLLTVIQTLKKQGNTIVIIE
HNLDVIKTADWIIDLGPKGGAGGGQIIATGTPEDVANNEVSFTGHYLAPLLTRKSPTPAA
SKKKK
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgaaatcaagatccgcggtgcccgcacccacaacctcaaaaacatcaatcta
gacattcctagagagaaattagtcgtccttaccggcttatctggatcaggcaaaagctca
ttagcgttcgacactctctatgcagagggccagcgccgctatgttgagtctctttcagcc
tatgcccgtcagtttttacaacttatggaaaaaccagacgttgacactattgaagggtta
tcgccagcgatttcgattgaacaaaaagcaacgagtcataacccgcgatcaactgttggt
accgttactgaaattcatgactacttacgtttgttgtttgcacgcgccggtacgccgcat
tgccccgatcacgacctgccgctagaagcgcaaagtgtttcacaaatggtcgataccgtg
ttgtcgatgccagaagatactaagttaatggttctggctccagtagtgagtgagcgcaaa
ggcgaattcgttgacctctttcaagacctacaggcacaaggctttgtgcgctttcgagtg
cgctctggtggcggcacagcaaacgccgccaaggcagaaatctttgaagtggatcagctg
cccactctaaagaaaaacgataagcactctattgaaatggttgttgatcgaattaaggtg
cgcccagatattcagcagcgtttagcggaatcttttgaaacagccttacgcttggctgat
ggcaaagccatgattgtggatatggacactggcaaagaaatgattttctccagtaagttc
gcttgtcctgtttgctcatactcattacaagaattggagcctcgcctcttctccttcaat
aaccccatgggcgcttgcccatcatgcgatggcctgggacatcagtctttctttgaccca
aagcgtatcgttgcacatccagatttatcactggcatcaggggcaattaaaggctgggat
cgtcgcaatcagttttacttcaaactgcttcagacgcttgccaagcacggtggcttcgat
gttgaaaagccatttgaaacactatccaaaaaacagcaagatctcattctcttgggttct
ggtgatgtcaccattccttttgaatacatcaacgagcgcggcaaaaacagtattcgcgag
catgcttttgaaggcattgttgccaactttgagagacgttatcgtgaaactgattcgatg
acagttcgcgaagaattatcacgctatcaaaatgttcaaacttgcccgggatgtaatggc
agtcgtttacgaaaagaagctcgctttgtcgaagtgggtgagaaaaaacagtcgcgtgca
atttatgaaatcagtgctttgcccctgaaagaagctaaagagtattttgaaacactcgaa
ctcaaaggtgcgaaaagagaaatcgcagacaagattgttaaagagatcagtgcacgccta
cgcttcttaaacgacgtgggccttgattacctatcgctcgagcgtagtgctgacaccctt
tcaggcggtgaagcccaacgaattcatctggcaagtcagattggctccggcttaactggc
gtgatgtatgtcctggatgaaccgtcgattggtctgcaccaacgcgataacgatcgtttg
attggaaccctgaaacacttacgtgatttaggtaatagcgtcttggtagttgagcatgat
gaagacatgatccgcgcatctgactgggtaattgatattggccctggtgccggtgtccat
ggtggcgaagtggttgctcaaggtacgcctacagaaattgaagcaaacccgaactcctta
actggcgcctaccttgctggccgtgaagtcattgcagttccagacaaacgcatcccagta
aatgagcgcttcttggagatcattggtgcgcgtggcaataacctgcaatctgtacacgcc
aagattccagttggacttctgacctgcgttaccggtgtatcaggctcaggtaagtcgacc
ttaattaacgacaccctgcatcatgcagttgcacaacatctgtatggctcgaatgctgag
cctgcagcacacgatgcaatcaagggtctggagcatttcgataaggtgattagtgttgac
caatctccgattggtagaactccacgctctaaccccgcaacctataccggtcttttcact
ccgattagagaactctttgctggtgttcctgcatcacgcgaacgaggctatgaagctggc
cgcttctcttttaacgttaaaggcggtcgctgtgattcttgtgaaggtgatggcgttctc
aaagtagagatgcatttcttgccagacgtgtatgtgccttgcgatgtttgtcatggcaag
cgctataaccgcgaaactttagatattcgttacaagggtaaaaatattcatgaagtgcta
tcgatgaccatcgaacaagcccatgaattctttgaagcgattccggtcgtaaagcgcaaa
ctcaaaacactccttgacgttggcttgggttacgtaaaactggggcaaagcgcaaccacc
ctttcaggcggcgaagcgcaacgcgtcaaactctcgctggaactctcaaaacgcgacact
ggcagaaccttatacatccttgatgagccaaccactggcctgcatttccatgacattcag
ttgttgctaactgtcattcaaacgctcaagaaacaaggcaatacgattgtcatcattgag
cacaatctcgatgtcattaagacggctgattggattattgacttggggcctaaaggtgga
gcgggcggcggacagatcattgccactggcacaccagaagatgtggccaataatgaagtg
agttttacaggtcactacttagcgcccttgctaactcgtaagagtcctactccggcagcc
agcaaaaagaaaaagtag
DBGET
integrated database retrieval system
