Pelagibacterium nitratireducens: V6617_00020
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Entry
V6617_00020 CDS
T11031
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
pnf Pelagibacterium nitratireducens
Brite
KEGG Orthology (KO) [BR:
pnf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnf03032
]
V6617_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
pnf03400
]
V6617_00020 (gyrB)
Enzymes [BR:
pnf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
V6617_00020 (gyrB)
DNA replication proteins [BR:
pnf03032
]
Prokaryotic type
DNA Topoisomerases
V6617_00020 (gyrB)
DNA repair and recombination proteins [BR:
pnf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
V6617_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_insert
GyrB_hook
Toprim_4
HATPase_c_3
DUF1690
Motif
Other DBs
NCBI-ProteinID:
WWT32903
UniProt:
A0ABZ2I4X1
LinkDB
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Position
4328..6784
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AA seq
818 aa
AA seq
DB search
MSDTPPIPNDAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVYEAVDNSVDEAL
AGHADLVSVTLNADGSVTVTDNGRGIPTDIHKEEGISAAEVIMTQLHAGGKFDQNSYKVS
GGLHGVGISVVNALSVWLKLKIRRAGGIYEVNFTHGVADGPLKRIGDYVEDKQPGTNEGR
SGTEITFMPSSETFTMVEFDFKTLEHRLRELAFLNSGVHIILRDKRHPEIVEIDLMYEGG
LEAFVQYLDKNKSALLDKPISLISEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTH
LAGLRGALTRQVNGYAEQSGITKREKVSLTGDDTREGLTCVLSVKVPDPKFSSQTKDKLV
SSEVRPVVENVVNDKLNQWFEEHPAEAKAIATKVAEAAAAREAARKARELTRRKSALEIS
SLPGKLADCQERDPAKAEIFIVEGDSAGGSAKQGRDRATQAVLPLRGKILNVERARFDRM
ISSDQVGTLITALGTGIGREEFNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEI
IERGHLYIAQPPLYKVTRGRSEQYLKDERAREDYLLAGGVEDAVLTTRAGTTHAGADLLS
IVEQARDLNHLIDNQNARYNRQMIEQAAVVGALDPAVMDTPETAQGLADRVANRLNRMSD
ETERTWEGALDGEGGYIFSRVVRGVTESHTLDAALLGSADARKLRNLAGKLDEIYGGVPT
LMRREINQEVYGPRSLFAIVQAAGAKGVSMQRYKGLGEMNASQLWETTMDKNGRTLLQVQ
IRETDDADSIFSQLMGDLVEPRRDFIQDNALAVSNLDI
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacgcccccgatccccaatgatgcagagtatggcgcggattcgatcaaggtc
ctaaagggcctcgatgcggtccggaaacggccgggcatgtatatcggggacaccgacgac
ggcacgggcctgcaccacatggtctatgaggccgtcgacaattcggtcgacgaggcgctg
gccggccatgcggatctggtttcggtgacgctcaatgccgatggctcggtgacggtgacc
gacaacgggcgcggcattcccaccgatatccacaaggaagaggggatttcggcggccgaa
gtgatcatgacccagcttcatgcgggcgggaaattcgaccagaattcctacaaggtctcg
ggcggtttgcacggggtgggaatttcggtggtcaacgcgctttcggtctggctcaagctc
aagatccgccgggccggtggcatctacgaggtgaacttcacccatggggtggccgacggg
ccgctcaagcggatcggcgactatgtcgaagacaagcagccgggcaccaatgagggccgt
tcgggtacggaaatcaccttcatgccctcgagcgagaccttcaccatggtcgagttcgac
ttcaagacgctcgagcaccggttgcgcgaactggcgttcctcaattcgggcgtccacatc
atcctgcgcgacaagcggcatcccgagatcgtcgagatcgacctgatgtatgagggcggg
ctcgaggccttcgttcagtatctcgacaagaacaaatcggcgctgctcgacaagcccatt
tcgctgatttcggaaaaggacgggatcaccgtggaagtggcgctgtggtggaacgacagc
taccacgagaacgtcttgtgctttaccaacaacattccccagcgcgacggcggcacgcac
cttgcggggctgcgcggcgcgctgacgcggcaggtcaatggctatgccgagcagagcggg
atcaccaagcgcgaaaaggtctcgctgaccggcgacgatacccgcgaggggctgacctgc
gtgctgtcggtcaaggttccggaccccaagttctcgtctcagaccaaggacaagctggtc
tcgtccgaagtgcggccggtggtcgagaacgtggtcaacgacaagctcaaccagtggttc
gaggaacatcccgctgaagccaaggccatcgccaccaaggtggccgaggccgcggcggcg
cgtgaagcggcgcgcaaggcgcgggaattgacgcggcgcaaatcggcgctggaaatctcc
tcgcttccgggaaagctcgccgattgccaggagcgcgatccggccaaggcggagatcttt
atcgtcgagggcgattcggccggtggttctgccaagcaggggcgcgatcgggctacccag
gcggtgctgccgctgcgcgggaaaatcctgaacgtggaacgcgcccggttcgaccggatg
atttcgtccgaccaggtgggtacgctgatcaccgctttgggcacgggcatcgggcgcgag
gagttcaaccccgacaagctccgctaccacaagatcatcatcatgaccgacgccgacgtg
gacggcgcccatatccgtacgctgcttttgacgttcttttaccggcagatgcccgaaatc
atcgagcgcgggcacctctatatcgcccagccgccgctctacaaggtgacgcgcgggcgc
tccgagcagtatctcaaggacgagcgggcgcgggaggattatcttctggccggcggggtc
gaggatgcggtgctcacgacgcgggccgggacaacccatgcgggggccgatctgctttcg
atcgtggaacaggcacgcgacctcaaccatctgatcgacaaccagaacgcgcgttacaac
cgccagatgatcgaacaggccgccgttgtcggcgcgctcgatccggcggtcatggacact
cccgagaccgcccagggactggccgaccgggtggccaaccggctgaaccgcatgtcggac
gagaccgagcgcacctgggaaggcgccctggacggcgagggcggatacatcttttcgcgc
gtggtgcgcggtgtgaccgagagccacacgctcgatgcggcgctgctgggctcggccgat
gcgcgcaagctgcgcaatctggccggcaagctcgacgagatctatggcggcgttccgacg
ctgatgcgccgcgagatcaaccaggaggtctatggaccgcgctcgctgttcgcgatcgtt
caggcggcgggcgccaagggcgtttccatgcagcgctacaaggggctgggcgaaatgaac
gcctcccagctgtgggaaaccactatggacaagaacgggcgcacgcttttgcaggtgcag
atccgggaaaccgacgacgcggattcgatcttttcccagctgatgggcgatcttgtcgag
ccgcggcgcgatttcatccaggacaatgcgctcgcggtttccaacctcgatatctga
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