Pelagibacterium nitratireducens: V6617_06985
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Entry
V6617_06985 CDS
T11031
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pnf Pelagibacterium nitratireducens
Pathway
pnf03420
Nucleotide excision repair
pnf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pnf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V6617_06985
03430 Mismatch repair
V6617_06985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnf03400
]
V6617_06985
Enzymes [BR:
pnf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6617_06985
DNA repair and recombination proteins [BR:
pnf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V6617_06985
MMR (mismatch excision repair)
Other MMR factors
V6617_06985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
AAA_11
PcrA_UvrD_tudor
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
WWT34201
LinkDB
All DBs
Position
complement(1396067..1398391)
Genome browser
AA seq
774 aa
AA seq
DB search
MSAAPPHRPQGPITSQFAAREPAYLAGLNAEQREAVQTTEGPLLVLAGAGTGKTRVLTTR
IAHILATRKARGNQILAVTFTNKAAREMKERIGKLVGASVEGMPWLGTFHSIGARLIRRH
AELVGLRPDFTILDTDDQIRLIKQLLAAENIDEKRWPARQFASMMDGWKNRGLLPKDISP
ADAGFFANGKGQKIYKDYQARLKTLNAADFGDLLLEGIRLFKENPEVLAQYHDRFRYMLV
DEYQDSNTAQYMWLRLLAQSRDGINSSNICVVGDDDQSIYGWRGAEVDNILRFEKDFPGA
RMIKLERNYRSTSNILSAASHLIANNESRLGKTLQTDVGEEGEKLSVTSVWDSEEEARQI
GEEIEQFQRQGDPLDDMAILVRASFQMREFEERFITLGLNYRVIGGPRFYERKEIRDALA
YLRIVAQPADDLALERIVNTPKRGLGDATLQIVHDTARAAQIPLLAAIRELTETEELKPK
QRSTFRGLVRQIDDWADRLRTIPHHELAEQILDESGYTAMWQNDKSADAPGRLENLKELI
RSMEEFENLGGFLEHIALVMDRDSGEGGDAVSIMTLHSAKGLEFNTVFLPGWEEGLFPHQ
RALDESGLAGLEEERRLAYVGITRARKRCRISLAQNRRIHGLWQSAIPSRFLDELPAQVV
EVTDTGSSYGGYTYGGRATTRFDNRDPFESVYETPGWQRAQRQQSARKGPGPVTIDGDLV
ARSSGPSAAYGVGERVFHLKFGYGMVTAAEGNKLSIDFEKAGPKKVLDSFVKRG
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccgccccgccccatcgcccgcaaggccccatcacctcccagttcgccgcgcgt
gagcccgcttatcttgccgggctcaacgccgaacaacgcgaggcggtacaaacaaccgaa
ggccccctgttggtcctcgccggcgccggcaccggcaagacccgcgtcctgaccacccgc
atcgcccatatccttgccacgcgaaaagcccgtggcaaccagatcctcgccgtcaccttc
accaacaaggccgcccgcgagatgaaggagcgcatcggcaagctggtcggagcctcggtc
gagggcatgccatggcttggcaccttccactccatcggcgcgcggctgatccgtcgccac
gccgaactggtcggcctgcgccccgatttcacgattctggacaccgacgaccagatccgt
ctgatcaagcaattgctcgccgccgaaaacatcgacgagaaacgctggccggcccgccag
ttcgcgtccatgatggatggctggaaaaatcgcggcctgctgcccaaggacatctccccg
gccgatgccgggttctttgccaatggcaagggccagaagatctacaaggactatcaggcc
cggctcaaaacattgaacgccgccgatttcggcgatctcctcctcgaaggcatacgcctc
ttcaaggaaaaccccgaagtcctcgcccagtatcacgaccgcttccgctacatgctggtc
gatgaataccaggattccaacaccgcccaatatatgtggctgcgcctcctcgcccagtcc
cgcgatggcatcaacagctccaacatttgtgtggtcggcgatgacgaccagtcgatctat
ggctggcgcggcgccgaggtcgacaacatcctgcgtttcgaaaaggactttcccggcgcc
aggatgatcaagctcgagcgcaattaccgctcgacctccaacatcctctccgccgcctcc
cacctgatcgccaacaacgaatcccggctgggcaagacactccagaccgatgttggcgaa
gaaggtgaaaaactctcggtaacttcagtctgggactcagaagaagaggcccgccagatc
ggcgaggagatcgaacagttccagcgccagggcgacccgctcgacgacatggccatcctc
gtgcgcgcctccttccagatgcgcgaattcgaagaacgcttcatcaccttgggcctgaac
tatcgcgtcatcggcggcccgcgcttttacgagcgcaaggaaatccgcgacgcgctggcc
tatctgcgcatcgtcgcccagcccgccgacgatcttgccctcgaacgcatcgtcaacacc
cccaagcgcggcctcggcgacgccaccctgcagatcgtccacgacaccgcccgcgccgcc
caaattcccctcctcgccgccattcgcgagttgaccgaaaccgaggaattaaagcccaaa
cagcgctcgaccttccgcgggctggtccgccagatcgacgattgggccgaccgcttgcgc
accatcccccatcacgaactggccgaacagattctcgatgaatccggctacaccgccatg
tggcagaacgacaaatccgccgacgcccccggacggctggaaaacttgaaagaactcatc
cgctccatggaagagttcgaaaacctcggcggtttcctcgaacacatcgcgctggtcatg
gaccgcgattccggcgaaggcggcgatgcggtttcgatcatgaccctgcactcggccaag
ggcctcgaattcaacacggtctttctccccggctgggaagaaggcctgttcccccaccag
cgcgccctcgatgaatccggcctcgccggcctcgaggaagaacggcgcctggcctatgtc
ggcatcacccgcgcccgcaagcgctgccgcatttcccttgcccagaaccggcgcatccac
ggcctctggcaatccgccatcccctcgcgcttcctcgacgaactccccgcccaggtcgtc
gaagtcaccgacaccgggtcctcctacggcggctacacctatggcggccgcgccacgacc
cggtttgataaccgcgaccccttcgaaagcgtctatgaaacccccggctggcaacgcgcc
cagcgccagcaatcggcccgcaaaggccccggcccggtcaccatagacggcgacctcgtc
gcccgctcctcaggcccctcggccgcctacggcgtcggcgaacgcgtcttccacctcaaa
ttcggctacggcatggtgaccgccgccgaaggcaacaagctctcgatcgattttgaaaag
gccgggccgaaaaaggtgttggatagtttcgtgaagagggggtga
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