Pelagibacterium nitratireducens: V6617_08805
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Entry
V6617_08805 CDS
T11031
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pnf Pelagibacterium nitratireducens
Brite
KEGG Orthology (KO) [BR:
pnf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnf03032
]
V6617_08805 (topA)
03400 DNA repair and recombination proteins [BR:
pnf03400
]
V6617_08805 (topA)
Enzymes [BR:
pnf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
V6617_08805 (topA)
DNA replication proteins [BR:
pnf03032
]
Prokaryotic type
DNA Topoisomerases
V6617_08805 (topA)
DNA repair and recombination proteins [BR:
pnf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
V6617_08805 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
MarR_2
HTH_24
Motif
Other DBs
NCBI-ProteinID:
WWT34546
LinkDB
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Position
complement(1749210..1751804)
Genome browser
AA seq
864 aa
AA seq
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MKVVIVESPAKAKTINKYLGKDFEVLASFGHVRDLPAKDGSVRPDDDFAMSWEVDSNSKK
RLADITRALKGADELILATDPDREGEAISWHLLDALKAKKAIKADMPVKRVVFNAITKDA
VTTAMQHPRDIDAPLVDAYLARRALDYLVGFTLSPILWRKLPGSRSAGRVQSVALRLVTE
REEEIERFKPQEYWSVIPTLNQSGKSFATRLYSVDGDKTDKLAVKTGEDAEGLKAAIEKG
NFKVASVDKKPTKRNPYAPFTTSTLQQDASSRLSLSPSRTMQIAQRLYEDGLITYMRTDA
VQMAPEAIEAARRVIGKEFGTEYVPEKPRLYQTKAKNAQEAHEAIRPTDLGKHPDTLRNL
DPDQHKIYQLIWRRALASQMRSAEIERTTADIDVIAAGRAITLRATGSVVTFPGFLGVYG
VEKTDEDDEDGKDLPALDVGDTPALENVEIEQHFTQPPARYTEASLIKKMEELGIGRPST
YAATLKTLQDRDYIKLEKRAIMPEDRGRLVTAFLQSFFTKYVEYGFTAGLEEELDEISAG
RIDYKEVLRRFWKDFSHQADEIKDLRVSEVLDALNDLLGHHIFPEKPDGTDPRLCPTCGT
GQLSLKLGKYGAFIGCSNYPECRHTQQLAESATGQASEAAQGDGVLGADPETGSEIYLKT
GRFGPYVQLGEDAKDAKRSSIPKGWDVGAMDLEKALKLLSLPREVGLHPEDSKPITAGIG
RYGPFVLHEKTYANLPDVEEVFTVGLNRAVDLIAQKRAGGGRGGRGAAVAAIQTFEHDDG
PITVRAGRYGPYVNQGKVNATLPKDLAPEAVTLEKALELIAAKGGSKGKAKAKPKAAAKK
PAAKKPAAKKTATKKPAAKKKAEA
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcgtcatcgtcgaaagcccggccaaggcaaagaccatcaacaaatatctgggc
aaggacttcgaggttctggccagctttggccatgtgcgcgacctgcccgccaaggacgga
tcggtgcggcccgacgacgatttcgccatgagttgggaagtcgattccaactccaaaaaa
cgccttgccgacatcacccgcgccctcaagggcgccgacgagttgattctggcaactgac
ccggatcgtgaaggcgaagccatttcctggcacctgctcgatgcgctcaaggcgaaaaag
gccatcaaggccgacatgccggtcaagcgcgtggtgttcaacgccatcaccaaggatgcc
gtgaccaccgccatgcagcatccgcgcgatatcgatgcgccgctggtcgatgcctatctg
gcgcgccgggcgcttgattatctggtggggttcacgctctcgccaatcctgtggcgcaag
ctgcccggctcacgctcggcaggtcgcgtgcaatcggtcgcgctgcgactggtcaccgag
cgcgaggaagagatcgagcgcttcaagccccaggaatactggagcgtcattccgactctc
aaccagtccggcaagagctttgcgacgcggctgtattcggtcgatggcgacaagaccgac
aagctggccgtcaagaccggcgaggatgccgaaggcctcaaagccgcaatcgagaagggc
aatttcaaggtcgccagcgtcgacaagaagccgaccaagcgcaatccgtacgcgccgttc
acaacatccacgctgcagcaggacgcctcctcgcggctgtcgctgtcgccttcgcgcacc
atgcagattgcccagcgcctctatgaggacgggctgatcacctatatgcgcaccgacgcg
gtgcagatggcgcccgaggccatcgaagctgcgcgccgggtgatcggcaaggaattcggc
accgagtacgtgcccgaaaagccgcgcctctatcagaccaaggccaaaaacgcccaggaa
gcgcacgaggcgatccgccccaccgatctgggcaagcaccccgatacgctgcgcaatctc
gaccccgaccagcacaagatctaccagctgatctggcgccgcgcgctggccagccagatg
cgctcggccgaaatcgaacgcaccacagccgatatcgacgtcattgccgcgggccgcgcc
attaccctgcgtgctacgggttcggtcgtgaccttcccgggctttctcggcgtctatggc
gtggaaaagaccgacgaggacgatgaggacggcaaggatctgcccgcgctcgatgtcggc
gacaccccggcgctcgaaaacgtcgagatcgaacagcatttcacccagccccctgcccgc
tatactgaagcgagcctcatcaagaagatggaagagctggggatcggccgtccctcgacc
tatgcggcgacgctcaagacgctccaggatcgcgattatatcaagcttgaaaaacgcgcc
atcatgcccgaggatcgcggacggctggtgacggcattcctgcagagctttttcaccaaa
tatgtcgaatacggctttaccgccggtctcgaggaagagctcgacgagatttcggccggc
cggatcgactacaaggaagtgctgcggcgtttctggaaggatttttcccatcaggccgac
gagatcaaggatctgcgggtttccgaagtcctcgatgcgctcaacgaccttctgggacac
catatcttccccgaaaagcccgatgggaccgacccgcggctgtgcccgacctgcgggacc
ggccagctttcgctgaaactgggcaagtacggcgcctttatcggctgctcgaactatccc
gaatgccgccatacccagcagcttgccgaaagcgccaccggacaggcgtccgaagccgca
cagggcgatggcgttctgggcgcggatccggaaacgggatcggaaatttacctcaaaacc
ggtcggttcggcccctatgtgcagcttggcgaagacgccaaggatgccaagcgttcctca
atccccaagggctgggatgtcggtgccatggatctggaaaaggcgctcaagctgctgtcc
ctaccgcgcgaagtcggtctgcatcccgaagacagcaagccgatcaccgcagggatcggg
cgttacggccccttcgtgttgcacgagaagacatatgccaatctccctgatgtggaagaa
gttttcacagtcgggctcaaccgcgctgttgacctgatcgcccagaagcgggccggcggc
gggcgcggaggacgtggggccgcggtggcggcgatccagaccttcgagcatgacgacggt
ccgatcacggttcgcgcgggccgctacggcccttatgtcaatcagggcaaggtcaacgcc
accctgcccaaggatctggcccccgaagccgtgacgcttgaaaaagccctggaactgatc
gccgccaagggcggttcgaagggcaaggcgaaagccaaacccaaagcagcagcaaaaaag
ccggccgccaaaaagccggcggcaaagaagacggcaaccaaaaagccagcagccaagaag
aaggccgaggcctaa
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